1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...actggcacccctttctagagagttctctgtagtactaagtaggatactgtggttattcttcacaagaaagaaaggcttaaactactattattgtgcgcagATCGCTTATTCTCTGATACAAGAGCAGGAGCAGAAAGGAAAAAAGAAGACATCTGATGATTACAATTACATATCTTTTGTCAGTCTTCTTGCTGATAAAC
species | Zea mays |
transcript | GRMZM2G081924_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTTGTATTTTCAGTTTGGCATCAAACTGCACAATGTGATGGATACACAG ATCGCTTATTCTCTGATACAAGAGCAGGAGCAGAAAGGAAAAAAGAAGACAEST: gi|19272494|gb|BM888750.1|BM888750
genomic: CTTTGTATTTTCAGTTTGGCATCAAACTGCACAATGTGATGGATACACAGgtaatcacga ... ttgtgcgcagATCGCTTATTCTCTGATACAAGAGCAGGAGCAGAAAGGAAAAAAGAAGACA
EST: CTTTGTATTTTCAGTTTGGCATCAAACTGCACAATGTGATGGATACACAG ATCGCTTATTCTCTGATACAAGAGCAGGAGCAGAAAGGAAAAAAGAAGACAEST: gi|42492027|gb|CK701073.1|CK701073
genomic: CTTTGTATTTTCAGTTTGGCATCAAACTGCACAATGTGATGGATACACAGgtaatcacga ... ttgtgcgcagATCGCTTATTCTCTGATACAAGAGCAGGAGCAGAAAGGAAAAAAGAAGACA
EST: CTTTGTATTTTCAGTTTGGCATCAAACTGCACAATGTGATGGATACACAG ATCGCTTATTCTCTGATACAAGAGCAGGAGCAGAAAGGAAAAAAGAAGACAEST: gi|76292398|gb|DV031966.1|DV031966
genomic: CTTTGTATTTTCAGTTTGGCATCAAACTGCACAATGTGATGGATACACAGgtaatcacga ... ttgtgcgcagATCGCTTATTCTCTGATACAAGAGCAGGAGCAGAAAGGAAAAAAGAAGACA
EST: CTTTGTATTTTCAGTTTGGCATCAAACTGCACAATGTGATGGATACACAG ATCGCTTATTCTCTGATACAAGAGCAGGAGCAGAAAGGAAAAAAGAAGACAEST: gi|22491227|gb|BU051150.1|BU051150
genomic: CTTTGTATTTTCAGTTTGGCATCAAACTGCACAATGTGATGGATACACAGgtaatcacga ... ttgtgcgcagATCGCTTATTCTCTGATACAAGAGCAGGAGCAGAAAGGAAAAAAGAAGACA
EST: CTTTGTATTTTCAGTTTGGCATCAAACTGCACAATGTGATGGATACACAG ATCGCTTATTCTCTGATACAAGAGCAGGAGCAGAAAGGAAAAAAGAAGACAEST: gi|87152125|gb|DY396914.1|DY396914
genomic: CTTTGTATTTTCAGTTTGGCATCAAACTGCACAATGTGATGGATACACAGgtaatcacga ... ttgtgcgcagATCGCTTATTCTCTGATACAAGAGCAGGAGCAGAAAGGAAAAAAGAAGACA
EST: CTTTGTATTTTCAGTTTGGCATCAAACTGCACAATGTGATGGATACACAG ATCGCTTATTCTCTGATACAAGAGCAGGAGCAGAAAGGAAAAAAGAAGACA
genomic: CTTTGTATTTTCAGTTTGGCATCAAACTGCACAATGTGATGGATACACAGgtaatcacga ... ttgtgcgcagATCGCTTATTCTCTGATACAAGAGCAGGAGCAGAAAGGAAAAAAGAAGACA
actgtggttattcttcacaagaaagaaaggcttaaactactattattgtgcgcagATCGCTTATTCTCTGATACAAGAGCAGGAGCAGAAAGGAAAAAAGAAGACATCTGATGATTACAATTACATATCTTTTGTCAGTCTTCTTGCTGATAAAC
ttaaactactattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actggcacccctttctagagagttctctgtagtactaagtaggatactgtggttattcttcacaagaaagaaaggcttaaactactattattgtgcgcagATCGCTTATTCTCTGATACAAGAGCAGGAGCAGAAAGGAAAAAAGAAGACATCTGATGATTACAATTACATATCTTTTGTCAGTCTTCTTGCTGATAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - gcacccc
- - - - - - - - - - - - - - - - - - - - - gatactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactac