1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttatctggtgcctttcaaaagaaaaagattggccatctagtgagattcttgtctccttattaaactgttgctctgcttctaactcctttttgcattgcagTCATCAGTTCTACACTCTCAGCCCAAATCTACCGTGGGAACTCCAGCATACATTGCTCCTGAGGTTCTTCTGAAGAAGGAATACGATGGGAAG
species | Zea mays |
transcript | GRMZM2G081915_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACGGCAGCACCGCGCCTCGCGTCAAGATATGTGATTTCGGCTACTCAAAG TCATCAGTTCTACACTCTCAGCCCAAATCTACCGTGGGAACTCCAGCATACEST: gi|78080573|gb|DV508985.1|DV508985
genomic: ACGGCAGCACCGCGCCTCGCGTCAAGATATGTGATTTCGGCTACTCAAAGgtagtagcaa ... tgcattgcagTCATCAGTTCTACACTCTCAGCCCAAATCTACCGTGGGAACTCCAGCATAC
EST: ACGGCAGCACCGCGCCTCGCGTCAAGATATGTGATTTCGGCTACTCAAAG TCATCAGTTCTACACTCTCAGCCCAAATCTACCGTGGGAACTCCAGCATACEST: gi|149005339|gb|EE039890.2|EE039890
genomic: ACGGCAGCACCGCGCCTCGCGTCAAGATATGTGATTTCGGCTACTCAAAGgtagtagcaa ... tgcattgcagTCATCAGTTCTACACTCTCAGCCCAAATCTACCGTGGGAACTCCAGCATAC
EST: ACGGCAGCACCGCGCCTCGCGTCAAGATATGTGATTTCGGCTACTCAAAG TCATCAGTTCTACACTCTCAGCCCAAATCTACCGTGGGAACTCCAGCATAC
genomic: ACGGCAGCACCGCGCCTCGCGTCAAGATATGTGATTTCGGCTACTCAAAGgtagtagcaa ... tgcattgcagTCATCAGTTCTACACTCTCAGCCCAAATCTACCGTGGGAACTCCAGCATAC
ttcttgtctccttattaaactgttgctctgcttctaactcctttttgcattgcagTCATCAGTTCTACACTCTCAGCCCAAATCTACCGTGGGAACTCCAGCATACATTGCTCCTGAGGTTCTTCTGAAGAAGGAATACGATGGGAAG
ttctaac putative branch site (score: 1)
ctctgcttctaactcc CT-rich tract
ttattaaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatctggtgcctttcaaaagaaaaagattggccatctagtgagattcttgtctccttattaaactgttgctctgcttctaactcctttttgcattgcagTCATCAGTTCTACACTCTCAGCCCAAATCTACCGTGGGAACTCCAGCATACATTGCTCCTGAGGTTCTTCTGAAGAAGGAATACGATGGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - ctggtgc
- - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcttc