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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttcttatcacatcttaaaatgcctttgattttttccgttcctgaaagaaaaacaagttcaacagcaaatgttctttatgttgtcattcatcttctcagGCACTAGAGATCCAGCAGTTGGATCTTCACCTGCAGTATCCAATAATAAGGCGTCTGGTGCCCAACCAGCTACGAATGAGGTATATCTGGTGTGGGATGA

Basic information

species Zea mays
transcript GRMZM2G081812_T01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18163216|gb|BM333055.1|BM333055
EST:     TCCAGCAGCAGTCGGTGTTGCAGGAATTGGATATGGAACCAATAACCAAG                         GCACTAGAGATCCAGCAGTTGGATCTTCACCTGCAGTATCCAATAATAAGG
genomic: TCCAGCAGCAGTCGGTGTTGCAGGAATTGGATATGGAACCAATAACCAAGgtatgttgat ... atcttctcagGCACTAGAGATCCAGCAGTTGGATCTTCACCTGCAGTATCCAATAATAAGG
EST: gi|17930578|gb|BM267538.1|BM267538
EST:     TCCAGCAGCAGTCGGTGTTGCAGGAATTGGATATGGAACCAATAACCAAG                         GCACTAGAGATCCAGCAGTTGGATCTTCACCTGCAGTATCCAATAATAAGG
genomic: TCCAGCAGCAGTCGGTGTTGCAGGAATTGGATATGGAACCAATAACCAAGgtatgttgat ... atcttctcagGCACTAGAGATCCAGCAGTTGGATCTTCACCTGCAGTATCCAATAATAAGG
EST: gi|26457257|gb|CA828840.1|CA828840
EST:     TCCAGCAGCAGTCGGTGTTTCAGGAATTGGATATGGAACCAATAACCAAG                         GCACTAGAGATCCAGCAGTTGGATCTT
genomic: TCCAGCAGCAGTCGGTGTTGCAGGAATTGGATATGGAACCAATAACCAAGgtatgttgat ... atcttctcagGCACTAGAGATCCAGCAGTTGGATCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagaaaaacaagttcaacagcaaatgttctttatgttgtcattcatcttctcagGCACTAGAGATCCAGCAGTTGGATCTTCACCTGCAGTATCCAATAATAAGGCGTCTGGTGCCCAACCAGCTACGAATGAGGTATATCTGGTGTGGGATGA
                                       tcattcatcttctc  CT-rich tract
                           ttctttat  TA-rich tract