Sequence
atgc intronic sequence ATGC exonic sequencegtaagataacttcgtaccaaccttagaattttccactggttatcagtaactagaaacaacccatgtcataatcatgttgcttatttgtagctccagctctgcggtgttcgataagtcatcttttaatcaatgtgaatacgtgattaatggatcgaccaatcttgcagGCTCTTCTTTCCTCAGGATCTTGACGCGTCTACTAATGCGCAGCTTGAGAGTGGTACTGCCGTCCAGGATTGCTGATGTCAGAGTGATTTTTTTTAAAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G081668_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os07g06440.1 (Oryza sativa), 3'ss of exon 11
gtaagataacttcgtacca-accttagaattttccactggttatcagtaactagaaacaacccatgtcataatcatgttgcttatttgtagctccagctctgcggtgttcgataagtcatcttttaatca----atgtgaatacg-tgattaatggatcgaccaatcttgcagGCTCTTCTTTCCTCAGGATCTTGACGCGTCTACTAATGCGCAGCTTGAGAGTGGTACTGCCGTCCAGGATTGCTGATGTCA---GAGTGATTTTTTTTAAAAA
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gtaagctgtccgtgcgtcatgccttgctgtctggtctaagtactcatctaatgcagtcaatt--tctctaaattttactagtaattt-tgtccttgatgctacagctctgcatgtctccaattttcatcagatcatgttattgagctcaatctttcatttctctaccttgcagGCTCTTCTTCCCTCAGGACCTGGATGCTTCTGCTGATGCACAGCTTGAGAGTGGTGCGTTTATTCAAAATAGCTGATGGGACATGACAGAGCGTTTGTTA---
upper sequence: GRMZM2G081668_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g06880.1 (Oryza sativa), 3'ss of exon 6
gtaagataacttcgtaccaaccttagaattttcca---ctggtt--atcagtaactagaaacaacccatgtca-taatcatgttgcttatttgtagctccagctctgcggtgttcgataagtcatcttttaatca----atgtgaatacg-tgattaatggatcgaccaatcttgcagGCTCTTCTTTCCTCAGGATCTTGACGCGTCTACTAATGCGCAGCTTGAGAGTGGTACTGCCGTCCAGGATTGCTGATGTCA---GAGTGATTTTTTTTAAAAA
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gtaagctgtccgtgcgtcatgccgaaactttttgctgtctggtccaagtactcatctaatgcagtcaatttctctaaatttcacgagtaattttgcccttgatgctacagctctgcacgtctccaatttccatcagatcatgttattgagctcaatctttcatttctctgccttgcagGTTCTTCTTCCCTCAGGACCTGGATGCTTCTGCTGATGCACAGCTTGAGAGTGGTGCGGCTATTCAAAATAGCTGATGGGACATGACAGAGCGTTTGCTA---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|113654489|gb|DW806673.1|DW806673EST: ATTTCTGACATAGAAGGCCTGAGTAGAACTCTGTACCACAACACATGCAG GCTCTTCTTTCCTCAGGATCTTGACGCGTCTACTAA
genomic: ATTTCTGACATAGAAGGCCTGAGTAGAACTCTGTACCACAACACATGCAGgtaagataac ... aatcttgcagGCTCTTCTTTCCTCAGGATCTTGACGCGTCTACTAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagtcatcttttaatcaatgtgaatacgtgattaatggatcgaccaatcttgcagGCTCTTCTTTCCTCAGGATCTTGACGCGTCTACTAATGCGCAGCTTGAGAGTGGTACTGCCGTCCAGGATTGCTGATGTCAGAGTGATTTTTTTTAAAAA
gattaat putative branch site (score: 3)
atcttttaatcaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagataacttcgtaccaaccttagaattttccactggttatcagtaactagaaacaacccatgtcataatcatgttgcttatttgtagctccagctctgcggtgttcgataagtcatcttttaatcaatgtgaatacgtgattaatggatcgaccaatcttgcagGCTCTTCTTTCCTCAGGATCTTGACGCGTCTACTAATGCGCAGCTTGAGAGTGGTACTGCCGTCCAGGATTGCTGATGTCAGAGTGATTTTTTTTAAAAA
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