Sequence
atgc intronic sequence ATGC exonic sequencegtatataatcagtatcaacgttgttctttgcttattctacattcatattttcggagatcacatctttctgaaattcccaacaatttacttctagAAAGAAGACCTCAAATGTGCGGTGTCATGTCTTCGGGACAATAAACAAGTTTCCACTATAGGCCTTTGGGGGCGATCAATGGGTGCCGTTACATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G081642_T04 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g10440.1 (Oryza sativa), 3'ss of exon 4
gtatataatcagtatcaacgttgttctttgcttattctacattcatattttcggagatcacatctttctgaaattcccaacaatttacttctagAAAGAAGACCTCAAATGTGCGGTGTCATGTCTTCGGGACAATAAACAAGTTTCCACTATAGGCCTTTGGGGGCGATCAATGGGTGCCGTTACATG
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gtatataatcagtatcacttttgttctt--------ctacatttatatcatggataattacattattctgaaatt-------------ttctagAAAGAGGACCTAAAATGTGTGGTGTCATACCTACGGACCACTAAGCAAGTTTCCTGTATAGGCCTTTGGGGGCGATCGATGGGTGCTGTTACAAG
upper sequence: GRMZM2G081642_T04 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA09G02050.1 (Glycine max), 3'ss of exon 5
----------------------------------------------------------------------------gtatataatcagtatcaacgttgttctttgcttatt---ctacattcatattttcggagatcac-----atctttctgaaattcccaacaatttacttc-tagAAAGAAGACCTCAAATGTGCGGTGTCATGTCTTCGGGACAATAAACAAGTTTCCACTATAGGCCTTTGGGGGCGATCAATGGGTGCCGTTACATG
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gtaagctacccctttttgcatgtatttatttctttaatcagtttccacaattgcatcttttatgcatctaactaaagtttctgtatgaaattaacgatgcagcacatctataaagttgcatgcttttttgtgtaattttcctgcaatgtttctcaagttt--aatgtttcctgtgacagAAAGATGATCTCAAGATGGTGGTGTCACATTTAAGAAGCAACAAACAAGTATCTCGTATAGGACTTTGGGGACGATCAATGGGTGCTGTTACAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|148969598|gb|EE020437.2|EE020437EST: CTGGGTCAGGTCTATCCGGCGGGGATTATGTCAGTTTGGGTTGGCATGAG AAAGAAGACCTCAAATGTGCGGTGTCATGTCTTCGGGACAATAAACAAGTT
genomic: CTGGGTCAGGTCTATCCGGCGGGGATTATGTCAGTTTGGGTTGGCATGAGgtatataatc ... ttacttctagAAAGAAGACCTCAAATGTGCGGTGTCATGTCTTCGGGACAATAAACAAGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cattcatattttcggagatcacatctttctgaaattcccaacaatttacttctagAAAGAAGACCTCAAATGTGCGGTGTCATGTCTTCGGGACAATAAACAAGTTTCCACTATAGGCCTTTGGGGGCGATCAATGGGTGCCGTTACATG
tttacttct CT-rich tract
aacaattta TA-rich tract