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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctcttgtcttttcatactgtatgcttgataatatatgtatgtagtgttgtgttcgttcatgtaaggaaactgattgtgcttacattttgcgacaataacaaccagATACAACTGTTGGCAAATGTTAATCTGAAAAGCACACCTCAATTAGTTGAATTGGTTGAGGACAGTAAG

Basic information

species Zea mays
transcript GRMZM2G081380_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081380_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g33080.1 (Oryza sativa), 3'ss of exon 4
gtaagctcttgtcttttcatactgtatgcttgata-atatatgta-tgtagtgttgt-gttcgttcatgtaaggaaactgattgtgcttacattttgcgacaataacaaccagATACAACTGTTGGCAAATGTTAATCTGAAAAGCACACCTCAATTAGTTGAATTGGTTGAGGACAGTAAG
          || | ||| |  |||    ||| |    | | | | || |||  |||  ||  ||||||||    | |||| |||||| ||||        ||| || ||||||||||||| |||||  |||| || ||||| |||||||||||||| || ||||| ||||| ||||| |||
----------gtgtgttcctgttgttattttgttgcgcacaagaactgaagttctgttatttcttcatgtatctca-ctgactgtgctaacat--------aatgactaccagATACAACTTTTGGCTGATGTAAACCTGAAGAGCACACCTCAATTGGTAGAATTAGTTGAAGACAGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148970201|gb|EE021132.2|EE021132
EST:     CCTCATCTGGTCCTGGGCTTAATATCTCAAATAATCAAG                         ATACAACTGTTGGCAAATGTTAATCTGAAAAGCACACCCTCA-TTAGTTGA
genomic: CCTCATCTGGTCCTGGGCTTAATATCTCAAATAATCAAGgtaagctctt ... taacaaccagATACAACTGTTGGCAAATGTTAATCTGAAAAGCACACC-TCAATTAGTTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcgttcatgtaaggaaactgattgtgcttacattttgcgacaataacaaccagATACAACTGTTGGCAAATGTTAATCTGAAAAGCACACCTCAATTAGTTGAATTGGTTGAGGACAGTAAG
                                          caataac  putative branch site (score: 2)
                             ttacatttt  TA-rich tract