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gtaaacatgtggaaccgtgtattcacttttttcaatatccatttccaatttattggtcccataatatacatcactaaatgaaaccaaaatcatatgcagTTGCGGTTTTCTAGTGATCTCTTGTTGGAAATAGGAGCTGGGATAGAATTAACTACTGCTGCATTCCCTCAGTTTTTCTTGCCTATGGCTTGCGTAGCCA
species | Zea mays |
transcript | GRMZM2G081188_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAATGCTTTTTGCACGTCAAGGAAAGAAGTTTGACTATGACCTAAAGCAG TTGCGGTTTTCTAGTGATCTCTTGTTGGAAATAGGAGCTGGGATAGAATTAEST: gi|148953714|gb|EC899078.2|EC899078
genomic: AAATGCTTTTTGCACGTCAAGGAAAGAAGTTTGACTATGACCTAAAGCAGgtaaacatgt ... tcatatgcagTTGCGGTTTTCTAGTGATCTCTTGTTGGAAATAGGAGCTGGGATAGAATTA
EST: AAATGCTTTTTGCACGTCAAGGAAAGAAGTTTGACTATGACCTAAAGCAG TTGCGGTTTTCTAGTGATCTCTTGGTGGAAATAGGAGCTGGGATAGAATTAEST: gi|32837137|gb|CD976815.1|CD976815
genomic: AAATGCTTTTTGCACGTCAAGGAAAGAAGTTTGACTATGACCTAAAGCAGgtaaacatgt ... tcatatgcagTTGCGGTTTTCTAGTGATCTCTTGTTGGAAATAGGAGCTGGGATAGAATTA
EST: AAATGCTTTTTGCACGTCAAGGAAAGAAGTTTGACTATGACCTAAAGCAG TTGCGGTTTTCTAGTGATCTCTTGTTGGAAATAGGAGCTGGGATAGAATTAEST: gi|211421799|gb|FL427212.1|FL427212
genomic: AAATGCTTTTTGCACGTCAAGGAAAGAAGTTTGACTATGACCTAAAGCAGgtaaacatgt ... tcatatgcagTTGCGGTTTTCTAGTGATCTCTTGTTGGAAATAGGAGCTGGGATAGAATTA
EST: AAGGAAAGAAGTTTGACTATGACCTAAAGCAG TTGCGGTTTTCTAGTGATCTCTTGTTGGAAATAGGAGCTGGGATAGAATTAEST: gi|149076159|gb|EE164750.2|EE164750
genomic: AAGGAAAGAAGTTTGACTATGACCTAAAGCAGgtaaacatgt ... tcatatgcagTTGCGGTTTTCTAGTGATCTCTTGTTGGAAATAGGAGCTGGGATAGAATTA
EST: AAATGCTTTTTGCACGTCAGGGAAAGAAGTTTGACTATGACCTAAAGCAG TTGCGGTTTTCTAGTGATCTCTTGEST: gi|31353527|gb|CD437884.1|CD437884
genomic: AAATGCTTTTTGCACGTCAAGGAAAGAAGTTTGACTATGACCTAAAGCAGgtaaacatgt ... tcatatgcagTTGCGGTTTTCTAGTGATCTCTTG
EST: AAATGCTTTTTGCACGTCAAGGAAAGAAGTTTGACTATGACCTAAAGCAG TTGCGGTTTTCTAGTGATCTCTTGTTGGAAATAGGAGCTGGGATAGAATTAEST: gi|148958478|gb|EC904716.2|EC904716
genomic: AAATGCTTTTTGCACGTCAAGGAAAGAAGTTTGACTATGACCTAAAGCAGgtaaacatgt ... tcatatgcagTTGCGGTTTTCTAGTGATCTCTTGTTGGAAATAGGAGCTGGGATAGAATTA
EST: AAATGCTTTTTGCACGTCAAGGAAAGAAGTTTGACTATGACCTAAAGCAG TTGCGGTTTTCTAGTGATCTCTTGTTGGAAATAGGAGCTGGGATAGAATTAEST: gi|148966241|gb|EE017202.2|EE017202
genomic: AAATGCTTTTTGCACGTCAAGGAAAGAAGTTTGACTATGACCTAAAGCAGgtaaacatgt ... tcatatgcagTTGCGGTTTTCTAGTGATCTCTTGTTGGAAATAGGAGCTGGGATAGAATTA
EST: AAATGCTTTTTGCACGTCAAGGAAAGAAGTTTGACTATGACCTAAAGCAG TTGCGGTTTTCTAGTGATCTCTTGTTGGAAATAGGAGCTGGGATAGAATTAEST: gi|211296912|gb|FL058764.1|FL058764
genomic: AAATGCTTTTTGCACGTCAAGGAAAGAAGTTTGACTATGACCTAAAGCAGgtaaacatgt ... tcatatgcagTTGCGGTTTTCTAGTGATCTCTTGTTGGAAATAGGAGCTGGGATAGAATTA
EST: ATGCTTTTTGCCCCGTCA-GGAAAGA-GTGTTGACTATGACCTAAAGCAG TTGCCGTTTTTCTAGTGATCCTCTTGGTGGAAATAGGAGCTTGGGATAGA-EST: gi|149012213|gb|EE042512.2|EE042512
genomic: ATGCTTTTTGCAC-GTCAAGGAAAGAAGT-TTGACTATGACCTAAAGCAGgtaaacatgt ... tcatatgcagTTGCGGTTTT-CTAGTGATC-TCTTGTTGGAAATAGGAGCT-GGGATAGAA
EST: AAATGCTTTTTGCACGTCAAGGAAAGAAGTTTGACTATGACCTAAAGCAG TTGCGGTTTTCTAGTGATCTCTTNGT-GGAAATAGGAGCT
genomic: AAATGCTTTTTGCACGTCAAGGAAAGAAGTTTGACTATGACCTAAAGCAGgtaaacatgt ... tcatatgcagTTGCGGTTTTCTAGTGATCTCTT-GTTGGAAATAGGAGCT
ccaatttattggtcccataatatacatcactaaatgaaaccaaaatcatatgcagTTGCGGTTTTCTAGTGATCTCTTGTTGGAAATAGGAGCTGGGATAGAATTAACTACTGCTGCATTCCCTCAGTTTTTCTTGCCTATGGCTTGCGTAGCCA
cactaaa putative branch site (score: 2)
ataatatacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacatgtggaaccgtgtattcacttttttcaatatccatttccaatttattggtcccataatatacatcactaaatgaaaccaaaatcatatgcagTTGCGGTTTTCTAGTGATCTCTTGTTGGAAATAGGAGCTGGGATAGAATTAACTACTGCTGCATTCCCTCAGTTTTTCTTGCCTATGGCTTGCGTAGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC