1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaatgccagccactttccgttgccatctgacctgaactattgctgataacaccgacattatgcctgcagCAGTCAAGAGCAGAGTCTCGATCGAAGGCTAAGGTCCCCAAAGACGAAGAAGAGAGCGGTGACGACGACGGGGACGAGGAGGCGGAGGAGCACGACAACA
species | Zea mays |
transcript | GRMZM2G080917_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTG CAGTCAAGAGCAGAGTCTCGATCGAAGGCTAAGGTCCCCAAAGACGAAGAAEST: gi|60356472|gb|DN223445.1|DN223445
genomic: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTGgtaaatgcca ... atgcctgcagCAGTCAAGAGCAGAGTCTCGATCGAAGGCTAAGGTCCCCAAAGACGAAGAA
EST: AGAAGACACCTAACAGTAGCAGCAAGAGTAACAAGCCTAGTTCAAAAGTG CAGTCAAGAGCAGAGTCTCGATCGAAGGCTAAGGTCCCCAAAGACGAAGAAEST: gi|148945591|gb|EC890845.2|EC890845
genomic: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTGgtaaatgcca ... atgcctgcagCAGTCAAGAGCAGAGTCTCGATCGAAGGCTAAGGTCCCCAAAGACGAAGAA
EST: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTG CAGTCAAGAGCAGAGTCTCGATCGAAGGCTAAGGTCCCCAAAGACGAAGAAEST: gi|211520812|gb|FL147606.1|FL147606
genomic: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTGgtaaatgcca ... atgcctgcagCAGTCAAGAGCAGAGTCTCGATCGAAGGCTAAGGTCCCCAAAGACGAAGAA
EST: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAA-T- CA---A-GAGCAGAGTCTCGATCGAAGGCTAAGGTCCCCAAAGACGAAGAAEST: gi|60340127|gb|DN207100.1|DN207100
genomic: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTGgtaaatgcca ... atgcctgcagCAGTCAAGAGCAGAGTCTCGATCGAAGGCTAAGGTCCCCAAAGACGAAGAA
EST: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGT- --GTCAAGAGCAGAGTCTCGATCGAAGGCTAAGGTCCCCAAAGACGAAGAAEST: gi|148997618|gb|EE035837.2|EE035837
genomic: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTGgtaaatgcca ... atgcctgcagCAGTCAAGAGCAGAGTCTCGATCGAAGGCTAAGGTCCCCAAAGACGAAGAA
EST: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAA-T- CA---A-GAGCAGAGTCTCGATCGAAGGCTAAGGTCCCCAAAGACGAAGAA
genomic: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTGgtaaatgcca ... atgcctgcagCAGTCAAGAGCAGAGTCTCGATCGAAGGCTAAGGTCCCCAAAGACGAAGAA
ttccgttgccatctgacctgaactattgctgataacaccgacattatgcctgcagCAGTCAAGAGCAGAGTCTCGATCGAAGGCTAAGGTCCCCAAAGACGAAGAAGAGAGCGGTGACGACGACGGGGACGAGGAGGCGGAGGAGCACGACAACA
tgataac putative branch site (score: 24)
aactatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgccagccactttccgttgccatctgacctgaactattgctgataacaccgacattatgcctgcagCAGTCAAGAGCAGAGTCTCGATCGAAGGCTAAGGTCCCCAAAGACGAAGAAGAGAGCGGTGACGACGACGGGGACGAGGAGGCGGAGGAGCACGACAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA