1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatttgtctataagtgtgcattgtttcaaatgcaattgataatcagcaatcagtttgctcctcaaattttgaaggcaaatcttgtctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAGTGTTAAAGCATACAG
species | Zea mays |
transcript | GRMZM2G080722_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GGGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAEST: gi|211393122|gb|FK956090.1|FK956090
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagG--TGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGA
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|211395748|gb|FK956105.1|FK956105
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGEST: gi|211393118|gb|FK956086.1|FK956086
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTG
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCC-ATCAGTGCTAGAGATAEST: gi|211393127|gb|FK956095.1|FK956095
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATA
EST: CCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCCAGCA-TATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGEST: gi|116818678|gb|EC861726.1|EC861726
genomic: CCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCC-AGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAG
EST: TCCTAGGTGTGGTTTCAGTGCATTACCAGTGAAGGTCGTCCAGCCATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|211395747|gb|FK956104.1|FK956104
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|211138212|gb|FL122275.1|FL122275
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGEST: gi|211215605|gb|FL316840.1|FL316840
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAG
EST: TCCTAGGTGTGGTTTCAGTGCATGAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCEST: gi|6020541|gb|AW065469.1|AW065469
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTC
EST: CCTAGGTGTGGTTTCAGTGCATTANGCAGTGAAGGTCCTCCAGCAATATG GNGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|211395740|gb|FK956097.1|FK956097
genomic: CCTAGGTGTGGTTTCAGTGCATTA-GCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TCCTAGGTGTGGTTTCAGTGCATCAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|211395752|gb|FK956109.1|FK956109
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TCCTAGGTGTGGTT-CAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAEST: gi|32908664|gb|CF013477.1|CF013477
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCA
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|149051827|gb|EE155954.2|EE155954
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
taatcagcaatcagtttgctcctcaaattttgaaggcaaatcttgtctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAGTGTTAAAGCATACAG
tcttgtct CT-rich tract
aaattttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttgtctataagtgtgcattgtttcaaatgcaattgataatcagcaatcagtttgctcctcaaattttgaaggcaaatcttgtctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAGTGTTAAAGCATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA