1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatttgtctataagtgtgcattgtttcaaatgcaattgataatcagcaatcagtttgctcctcaaattttgaaggcaaatcttgtctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAGTGTTAAAGCATACAG
species | Zea mays |
transcript | GRMZM2G080722_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GGGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAEST: gi|71772931|gb|DR970854.1|DR970854
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagG--TGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGA
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|211393122|gb|FK956090.1|FK956090
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|149072625|gb|EE160853.2|EE160853
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|5819352|gb|AI987558.1|AI987558
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: AGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|211395748|gb|FK956105.1|FK956105
genomic: AGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGEST: gi|211393118|gb|FK956086.1|FK956086
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTG
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCC-ATCAGTGCTAGAGATAEST: gi|84980246|gb|DW530595.1|DW530595
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATA
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|116818678|gb|EC861726.1|EC861726
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TCCTAGGTGTGGTTTCAGTGCATTACCAGTGAAGGTCGTCCAGCCATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|76019176|gb|DT946346.1|DT946346
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|31348993|gb|CD433350.1|CD433350
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|6827118|gb|AW330761.1|AW330761
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|149076048|gb|EE164622.2|EE164622
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|211208256|gb|FL334762.1|FL334762
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|71772930|gb|DR970853.1|DR970853
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|211393127|gb|FK956095.1|FK956095
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: CCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCCAGCA-TATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGEST: gi|149072626|gb|EE160854.2|EE160854
genomic: CCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCC-AGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAG
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|76019175|gb|DT946345.1|DT946345
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|211138212|gb|FL122275.1|FL122275
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGEST: gi|31364491|gb|CD448846.1|CD448846
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAG
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|211215605|gb|FL316840.1|FL316840
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TCCTAGGTGTGGTTTCAGTGCATGAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCEST: gi|6020541|gb|AW065469.1|AW065469
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTC
EST: CCTAGGTGTGGTTTCAGTGCATTANGCAGTGAAGGTCCTCCAGCAATATG GNGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|71771232|gb|DR969169.1|DR969169
genomic: CCTAGGTGTGGTTTCAGTGCATTA-GCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TCCTGGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|211395740|gb|FK956097.1|FK956097
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TCCTAGGTGTGGTTTCAGTGCATCAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|211395752|gb|FK956109.1|FK956109
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TCCTAGGTGTGGTT-CAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAEST: gi|32908664|gb|CF013477.1|CF013477
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCA
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|149051827|gb|EE155954.2|EE155954
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|211395747|gb|FK956104.1|FK956104
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|149051826|gb|EE155953.2|EE155953
genomic: TCCTAGGTGTGGTTTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: TTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATAGG GTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAEST: gi|149076047|gb|EE164621.2|EE164621
genomic: TTCAGTGCATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
EST: ATTAGCAGTGAAGGTCCTCCAGCAATATG GGGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
genomic: ATTAGCAGTGAAGGTCCTCCAGCAATATGgtaatttgtc ... tctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGA
taatcagcaatcagtttgctcctcaaattttgaaggcaaatcttgtctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAGTGTTAAAGCATACAG
tcttgtct CT-rich tract
aaattttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttgtctataagtgtgcattgtttcaaatgcaattgataatcagcaatcagtttgctcctcaaattttgaaggcaaatcttgtctgctgcagGTGTCCCCATCAGTGCTAGAGATATTCTTTCAGATCTAAAGCTCAAAGAGAGTGTTAAAGCATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA