1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acgcatttcctcgtttgtcattgtgtacaacaagttatttggtagcagttttggtgaggttggtttaggaacaaagatctgactgtcagcttcactatagGCGGATGATTTCTTGGGCGTTGAGGACATATTTTCGCACAGTGGTGATAAGAAGGCGTCACTGAAACCTCCAGTTGGCAAGGCACTGGCAATGTTCAGCG
species | Zea mays |
transcript | GRMZM2G079143_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCAGCTTCCTCAGAAGGTTCTTCTTCCTAAATTGAAGAAGTCCAGCAAG GCGGATGATTTTTTGGGCGTTGAGGACATATTTTCGCACAGTGGTGATAAGEST: gi|211345612|gb|FL479622.1|FL479622
genomic: ACCAGCTTCCTCAGAAGGTTCTTCATCCTAAATTGAAGAAGTCCAGCAAGgttagtgctc ... ttcactatagGCGGATGATTTCTTGGGCGTTGAGGACATATTTTCGCACAGTGGTGATAAG
EST: ACCAGCTTCCTCAGAAGGTTCTTCATCCTAAATTGAAGAAGTCCAGCAAG GCGGATGATTTCTTGGGCGTTGAGGACATATTTTCGCACAGTGGTGATAAGEST: gi|111433439|gb|EE297756.1|EE297756
genomic: ACCAGCTTCCTCAGAAGGTTCTTCATCCTAAATTGAAGAAGTCCAGCAAGgttagtgctc ... ttcactatagGCGGATGATTTCTTGGGCGTTGAGGACATATTTTCGCACAGTGGTGATAAG
EST: ACCAGCTTCCTCAGAAGGTTCTTCATCCTAAATTGAAGAAGTCCAGCAAG GCGGATGATTTCTTGGGCGTTGAGGACATATTTTCGCACAGTGGTGATAAGEST: gi|12046018|gb|BF728053.1|BF728053
genomic: ACCAGCTTCCTCAGAAGGTTCTTCATCCTAAATTGAAGAAGTCCAGCAAGgttagtgctc ... ttcactatagGCGGATGATTTCTTGGGCGTTGAGGACATATTTTCGCACAGTGGTGATAAG
EST: CAGCTTTCCTCANGAAGGTTCTTCATCCTAAATTGAAGAAGTCCAGCAAGG GCGGATGATTTCTTGGGCGTTGAAGACATATTCTCGCACAGTGGTGATAAEST: gi|60348779|gb|DN215752.1|DN215752
genomic: CAGC-TTCCTCA-GAAGGTTCTTCATCCTAAATTGAAGAAGTCCAGCAA-Ggttagtgctc ... ttcactatagGCGGATGATTTCTTGGGCGTTGAGGACATATTTTCGCACAGTGGTGATAA
EST: ACCAGCTTCCTCAGAAGGTTCTTCATCCTAAATTGAAGAAGTCCAGCAAG GCGGATGATTTCTTGGGCGTTGAGGACATATTTTCGCACAGTGGTGATAAGEST: gi|45567461|gb|CK985583.1|CK985583
genomic: ACCAGCTTCCTCAGAAGGTTCTTCATCCTAAATTGAAGAAGTCCAGCAAGgttagtgctc ... ttcactatagGCGGATGATTTCTTGGGCGTTGAGGACATATTTTCGCACAGTGGTGATAAG
EST: ACCAGCTTCCTCAGAAGGTTCTTCATCCTAAATTGAAGAAGTCCAGCAAG GCGGATGATTTCTTGGGCGTTGAGGACATATTCTCGCACAGTGGTGATAAG
genomic: ACCAGCTTCCTCAGAAGGTTCTTCATCCTAAATTGAAGAAGTCCAGCAAGgttagtgctc ... ttcactatagGCGGATGATTTCTTGGGCGTTGAGGACATATTTTCGCACAGTGGTGATAAG
cagttttggtgaggttggtttaggaacaaagatctgactgtcagcttcactatagGCGGATGATTTCTTGGGCGTTGAGGACATATTTTCGCACAGTGGTGATAAGAAGGCGTCACTGAAACCTCCAGTTGGCAAGGCACTGGCAATGTTCAGCG
atctgac putative branch site (score: 3)
cttcact putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgcatttcctcgtttgtcattgtgtacaacaagttatttggtagcagttttggtgaggttggtttaggaacaaagatctgactgtcagcttcactatagGCGGATGATTTCTTGGGCGTTGAGGACATATTTTCGCACAGTGGTGATAAGAAGGCGTCACTGAAACCTCCAGTTGGCAAGGCACTGGCAATGTTCAGCG
- - - - - - - - - - - - - -caacaag
- - - - - - - - - - - - - - - - - - - - -gtagcag
- - - - - - - - - - - - - - - - - - - - - - - - ttttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgactg