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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtcttacttatcagttatcacatactaacgtgtataggaaaagcatgtcaacgcatagatgtaatttgatcttctgtagttgaccatgatgcgtcgtaacaattgcagGATCTGGAATGGGGGCAGCAGCTGTGTTCGAGCTATGTTCGGCCCGGCTGGAGGTATCGACCATCACTCGTCACTGTAACCTGATGGTGATCGGCGACCG

Basic information

species Zea mays
transcript GRMZM2G079117_T01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71330011|gb|DR801743.1|DR801743
EST:     GAAGTGCCGGGGCAGAGACTGCAGATTTGGTGTTGTCACCATGTGTATCG                         GATCTGGAATGGGGGCAGCAGCTGTGTTCGAGCTATGTTCGGCCCGGCTGG
genomic: GAAGTGCCGGGGCAGAGACTGCAGATTTGGTGTTGTCACCATTTGTATCGgttagtctta ... acaattgcagGATCTGGAATGGGGGCAGCAGCTGTGTTCGAGCTATGTTCGGCCCGGCTGG
EST: gi|71441690|gb|DR831406.1|DR831406
EST:     GAAGTGCCGGGGCAGAGACTGCAGATTTGGTGTTGTCACCATGTGTATCG                         GATCTGGAATGGGGGCAGCAGCTGTGTTCGAGCTATGTTCGGCCCGGCTGG
genomic: GAAGTGCCGGGGCAGAGACTGCAGATTTGGTGTTGTCACCATTTGTATCGgttagtctta ... acaattgcagGATCTGGAATGGGGGCAGCAGCTGTGTTCGAGCTATGTTCGGCCCGGCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catagatgtaatttgatcttctgtagttgaccatgatgcgtcgtaacaattgcagGATCTGGAATGGGGGCAGCAGCTGTGTTCGAGCTATGTTCGGCCCGGCTGGAGGTATCGACCATCACTCGTCACTGTAACCTGATGGTGATCGGCGACCG
                                        tcgtaac  putative branch site (score: 2)
     atgtaattt  TA-rich tract