1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tattgctttagcatgtttgctgaaaatgtactccttttgatctgctcgaaacgttccatttgttaaatgctaatactatcaaaactgttttgcagctcagTTGAAGTTTTGTTTGAGGACTTCCTTTG
species | Zea mays |
transcript | GRMZM2G078458_T05 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAG CEST: gi|71447103|gb|DR828153.1|DR828153
genomic: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAGgtttggattc ... tgcagctcag-
EST: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAG CEST: gi|94477458|gb|EB706416.1|EB706416
genomic: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAGgtttggattc ... tgcagctcag-
EST: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAG CEST: gi|94477458|gb|EB706416.1|EB706416
genomic: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAGgtttggattc ... tgcagctcag-
EST: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAG CEST: gi|148953147|gb|EE152628.2|EE152628
genomic: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAGgtttggattc ... tgcagctcag-
EST: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAG TTGAAGTTTTGTTTGAGGACTTCCTTTGEST: gi|149072634|gb|EE160863.2|EE160863
genomic: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAGgtttggattc ... tgcagctcagTTGAAGTTTTGTTTGAGGACTTCCTTTG
EST: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAG CEST: gi|149072634|gb|EE160863.2|EE160863
genomic: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAGgtttggattc ... tgcagctcag-
EST: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAG CEST: gi|149112477|gb|EE295347.2|EE295347
genomic: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAGgtttggattc ... tgcagctcag-
EST: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAG TTGAAGTTTTGTTTGAGGACTTCCTTTGEST: gi|149079364|gb|EE168341.2|EE168341
genomic: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAGgtttggattc ... tgcagctcagTTGAAGTTTTGTTTGAGGACTTCCTTTG
EST: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAG CEST: gi|149079364|gb|EE168341.2|EE168341
genomic: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAGgtttggattc ... tgcagctcag-
EST: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAG CEST: gi|76928343|gb|DV171591.1|DV171591
genomic: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAGgtttggattc ... tgcagctcag-
EST: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAG CEST: gi|76928343|gb|DV171591.1|DV171591
genomic: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAGgtttggattc ... tgcagctcag-
EST: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAG C
genomic: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAGgtttggattc ... tgcagctcag-
tcgaaacgttccatttgttaaatgctaatactatcaaaactgttttgcagctcagTTGAAGTTTTGTTTGAGGACTTCCTTTG
tgctaat putative branch site (score: 63)
ctgtttt putative PPT
taatactatcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgctttagcatgtttgctgaaaatgtactccttttgatctgctcgaaacgttccatttgttaaatgctaatactatcaaaactgttttgcagctcagTTGAAGTTTTGTTTGAGGACTTCCTTTG
- ttgcttt
- - - - - gcatgtt
- - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - - - - - - -ctgctcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgttt