1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...catcatattgctttagcatgtttgctgaaaatgtactccttttgatctgctcgaaacgttccatttgttaaatgctaatactatcaaaactgttttgcagCTCAGTTGAAGTTTTGTTTGAGGACTTCCTTTG
species | Zea mays |
transcript | GRMZM2G078458_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCACCAAG CTCAGTTGAAGTTTTGTTTEST: gi|101398762|gb|EB821253.1|EB821253
genomic: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAGgtttggattc ... tgttttgcagCTCAGTTGAAGTTTTGTTT
EST: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAG CTCAGTTGAAGTTTTGTTTGAGGACTTCCTTTGEST: gi|149072634|gb|EE160863.2|EE160863
genomic: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAGgtttggattc ... tgttttgcagCTCAGTTGAAGTTTTGTTTGAGGACTTCCTTTG
EST: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAG CTCAGTTGAAGTTTTGTTTGAGGACTTCCTTTG
genomic: AAGGTTAAAGGGCTCGTTGAGGAGCTTTTGCATGTCGATGAATCAGCAAGgtttggattc ... tgttttgcagCTCAGTTGAAGTTTTGTTTGAGGACTTCCTTTG
tctgctcgaaacgttccatttgttaaatgctaatactatcaaaactgttttgcagCTCAGTTGAAGTTTTGTTTGAGGACTTCCTTTG
tgctaat putative branch site (score: 2)
ctgtttt putative PPT
taatactatcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catcatattgctttagcatgtttgctgaaaatgtactccttttgatctgctcgaaacgttccatttgttaaatgctaatactatcaaaactgttttgcagCTCAGTTGAAGTTTTGTTTGAGGACTTCCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - -ttgcttt
- - - - - - - -gcatgtt
- - - - - - - - - - - tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - ctgctcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcaaaa