Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcttgcaactctacctactgatgttttttttttcttcctatcgctaagcacggtttgcagtgcactaactggaatgaatgccctcgtatttggtctgcagAAGCGAAGAGGGCTGAAAGGGATG

Basic information

species Zea mays
transcript GRMZM2G077607_T05
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148986662|gb|EE030442.2|EE030442
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|71766162|gb|DR964099.1|DR964099
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|86474504|gb|DY240874.1|DY240874
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|149001201|gb|EE038471.2|EE038471
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|91055118|gb|EB165536.1|EB165536
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|148939787|gb|EC884487.2|EC884487
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|78080307|gb|DV508719.1|DV508719
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|71764405|gb|DR962342.1|DR962342
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|110522399|gb|EE026583.1|EE026583
EST:     TTTGACGAGGGGACGGTACGAGGTGCGGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATGG
genomic: TTTGACGAGGGGACGGTACGAGGTGC-GGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGAT-G
EST: gi|148956370|gb|EC902184.2|EC902184
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|149104291|gb|EE289730.2|EE289730
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|71775438|gb|DR973316.1|DR973316
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|78110504|gb|DV528914.1|DV528914
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|149101066|gb|EE187165.2|EE187165
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|76281284|gb|DV020852.1|DV020852
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|148961771|gb|EE012548.2|EE012548
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|93283758|gb|EB676022.1|EB676022
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|149080427|gb|EE169450.2|EE169450
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|149110620|gb|EE294219.2|EE294219
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|71434244|gb|DR815294.1|DR815294
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|71440678|gb|DR821728.1|DR821728
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|71317318|gb|DR795348.1|DR795348
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|71760606|gb|DR958543.1|DR958543
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|148928285|gb|EE284886.2|EE284886
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|149102953|gb|EE288307.2|EE288307
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|76914201|gb|DV165443.1|DV165443
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|71433799|gb|DR814849.1|DR814849
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|148945559|gb|EC890812.2|EC890812
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|149084716|gb|EE174208.2|EE174208
EST:     ATTTGTCGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATGG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGAT-G
EST: gi|148963705|gb|EE014773.2|EE014773
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|148987354|gb|EE031196.2|EE031196
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|101402571|gb|EB822834.1|EB822834
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|14244188|gb|BG842258.2|BG842258
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|91878131|gb|EB408088.1|EB408088
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|50331099|gb|CO526225.1|CO526225
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|38687645|gb|CK144676.1|CK144676
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|101395953|gb|EB819903.1|EB819903
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|149021603|gb|EE154455.2|EE154455
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|101385894|gb|EB814995.1|EB814995
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|71756828|gb|DR954765.1|DR954765
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|148951901|gb|EC897677.2|EC897677
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|88753314|gb|DY537455.1|DY537455
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|149103379|gb|EE288765.2|EE288765
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|149106408|gb|EE292135.2|EE292135
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|148953834|gb|EC899210.2|EC899210
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|149078211|gb|EE166966.2|EE166966
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|149058026|gb|EE156710.2|EE156710
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|148933575|gb|EC877445.2|EC877445
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|148933726|gb|EC877642.2|EC877642
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|78079039|gb|DV507451.1|DV507451
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|148961303|gb|EE012028.2|EE012028
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|148958433|gb|EC904667.2|EC904667
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|76282270|gb|DV021838.1|DV021838
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|149073840|gb|EE162161.2|EE162161
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|148963706|gb|EE014774.2|EE014774
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|148997313|gb|EE035808.2|EE035808
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|50337368|gb|CO532494.1|CO532494
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|148995104|gb|EE034396.2|EE034396
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|76908493|gb|DV162968.1|DV162968
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
EST: gi|91874845|gb|EB404802.1|EB404802
EST:     ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG                         AAGCGAAGAGGGCTGAAAGGGATG
genomic: ATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAGgtataaatcg ... tggtctgcagAAGCGAAGAGGGCTGAAAGGGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcacggtttgcagtgcactaactggaatgaatgccctcgtatttggtctgcagAAGCGAAGAGGGCTGAAAGGGATG
                 cactaac  putative branch site (score: 1)
                           aatgaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcttgcaactctacctactgatgttttttttttcttcctatcgctaagcacggtttgcagtgcactaactggaatgaatgccctcgtatttggtctgcagAAGCGAAGAGGGCTGAAAGGGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG