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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcatatctattattcctttgtatcagtagacctcccaagtgtttgttgcaaatatgcagtatggtcccatttctcttttgtcctatttcatattcttcatacgtttaaggtcattgcctcttgctgttaaattttcagttttgctctcttaggtgattattctgttaaccaacttattctcgtggtttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATA

Basic information

species Zea mays
transcript GRMZM2G077222_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G077222_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g64400.4 (Oryza sativa), 3'ss of exon 4
gtgcatatctattattcctttgtatcagtagacctcccaagtgtttgttgcaaatatgcagtatggtcccatttctcttttgtcctatttcatattcttcatacgtttaaggtcattgcctcttgctgttaaattttcagttttgctctcttaggtgattattctgttaaccaacttattctcgtggtttcca--tacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATA
                                                                                                   || | | |  |  |   |   | ||||  |  |||||| | ||| | || |||||    | ||||  |  || || || || |   | ||||||  || |||||||||| ||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||| ||||||||||||||  |||||||||||| |||
---------------------------------------------------------------------------------------------------caaaggatggaatttcatattt-ttgccttataattttgaatttggttcacttagtaattcattccatagactaagttcttgtttggatttccaactatagGAACACTTCCTCCAAAGTGTATCCAGCAATGTATATTGAGAATGTGACTGAACTTGCCTTTGATGATATCACACCTGAAGATTTTGATTTTCCATTTATA

upper sequence: GRMZM2G077222_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA09G25200.1 (Glycine max), 3'ss of exon 8
gtgcatatctattattcctttgtatcagtagacctcccaagtgtttgttgcaaatatgcagtatggtcccatttctcttttgtcctatttcatattcttcatacgtttaaggtcattgcctcttgctgttaaattttcagttttgctctcttaggtgattattctgttaaccaacttattctcgtggtttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATA
                                                                                                        ||   |  | ||| |  | |     | |||    |  | || |  | || || || |||  |     ||  | | | || ||||  |     |||| |||  | |||||||||||||| || ||||| || || ||||| ||||| ||||||||||| |||||||  || || || ||||||||| | | ||| 
--------------------------------------------------------------------------------------------------------gtagtaatttatttctacatatg--tgaataacaaaatgtg-ttacatatgtaat-atttggcattacatgtgactttc-tggtaacttgttagGAGCACAGTTTCAAAAGTGTATCCTGCCATGTACATAGACAATGTTACTGAGCTTGCATTTGATGATGTCATCCCCGAGGACCCTGATTTTTCTTCCATT

upper sequence: GRMZM2G077222_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA16G30160.1 (Glycine max), 3'ss of exon 4
gtgcatatctattattcctttgtatcagtagacctcccaagtgtttgttgcaaatatgcagtatggtcccatttctcttttgtcctatttcatattcttcatacgtttaaggtcattgcctcttgc-tgttaaattttcagttttgctctcttaggtgattattctgttaaccaacttattctcgtggtttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATA
                                                                                                     || ||     ||   | |||  ||| | |   | |  ||   |   |  | |  || ||   | ||  |       |    |  ||||  |     |||| |||  | |||||||||||||| || |||||||| || ||||  ||||| ||||||||||| |||||||| || || || ||||||||| | | ||| 
----------------------------------------------------------------------------------------------------gta-gtaatttgtttctaccttctgcatatgtgaataacaaaatgtgttacatgtgtaata--tttggcattacgtgtgcctttctggtaacttgttagGAGCACAGTTTCAAAAGTGTATCCTGCCATGTATATAGACAATGCTACTGAGCTTGCATTTGATGATGTCACTCCCGAGGACCCTGATTTTTCTTCCATT

upper sequence: GRMZM2G077222_T01 (Zea mays), 3'ss of exon 4
lower sequence: AT5G23890.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgcatatctattattcctttgtatcagtagacctcccaagtgtttgttgcaaatatgcagtatggtcccatttctcttttgtcctatttcatattcttcatacgtttaaggtcattgcctct--tgctgttaaattttcagttttgctctcttaggtgattattctgttaaccaacttattctcgtggtttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATA
                                                                                           ||| | |||||   |||   || | ||  |||  ||  || ||| | ||  |  |      |     |   | |   |  |   |  | |  || |    ||  | ||| |||||   ||||||||||||||| || ||||||||||| ||||| ||||| ||||| ||||| ||| | || || ||||| ||||||||| | | ||| 
-----------------------------------------------------------------------------------------gtatact-ttcatgatttt---gttagtgtttctggtggggtcaaaatatccttcgtatgtattagaaagtgaaattcatgcatttatgtgtgttctttaactctttgcagAAACACAACCTCAAAAGTGTATCCTGCTATGTATATTGAGAATGTTACTGAGCTTGCTTTTGATGATATTACTCCCGAAGACCCTGATTTTTCTTCCATT

upper sequence: GRMZM2G077222_T01 (Zea mays), 3'ss of exon 4
lower sequence: AT5G52410.1 (Arabidopsis thaliana), 3'ss of exon 5
gtgcatatctattattcctttgtatcagtagacctcccaagtgtttgttgcaaatatgcagtatggtcccatttctcttttgtcctatttcatattcttcatacgtttaaggtcattgcctcttgctgttaaattttcagttttgctctcttaggtgattattctgttaaccaacttattctcgtggtttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATA
                                                                                                      ||  | ||      |   || | || || ||   |    |    | | | |     |||    || ||  ||  |||  || | | ||    | |||||| |    |||||||| ||||| || |||||||| || ||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||||||| 
---------------------------------------------------------------------------------------------------gtaactatcaaaaaatctctttcctactcttgaaacattg--tgaaatatttcactgccttacaacgtgaa--aa--tatcttcattggtt----atagGAACTCAGCATCAAAAGTATATCCTGCCATGTATATAGAAAATGTTACTGAACTTGCATTTGATGATATTACACCTGAAGATCCTGATTTTCCATTCATT

upper sequence: GRMZM2G077222_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv16s0050g00600.t01 (Vitis vinifera), 3'ss of exon 5
gtgcatatctattattcctttgtatcagtagacctcccaagtgtttgttgcaaatatgcagtatggtcccatttctcttttgtcctatttcatattcttcatacgtttaaggtcatt-gcctcttgctgttaaattttcagttttgctctcttaggtgattattctgttaaccaacttattctcgtggtttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATA
                                                                                                ||  |     |  ||  |||  || |||    | ||       |  ||  |    || | || | ||    |      | | |||    |   |||| |  ||||| ||  | ||||| || |||||||| ||||| || |  ||| | ||||||||||||||||| ||| | ||||||||||| ||||||||| ||| ||| 
------------------------------------------------------------------------------------------------ctgtagcttgtagagtgcatcagcatctgaaggctaccaacataaattcac---attggatgttgataacatgtgattaataatttctatccattccttgtagGAATACAGTTTCAAAGGTATATCCAGCTATGTACATAGGAAATATTACTGAACTTGCATTTGATGATATTACACCTGAAGACCCTGATTTTTCATCCATT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211534207|gb|FL317060.1|FL317060
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211153740|gb|FL193241.1|FL193241
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211320240|gb|FL338455.1|FL338455
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211155354|gb|FL193264.1|FL193264
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211499064|gb|FL037733.1|FL037733
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211356810|gb|FL332696.1|FL332696
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGNCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211155353|gb|FL193263.1|FL193263
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211265615|gb|FL356056.1|FL356056
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211155352|gb|FL193262.1|FL193262
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211480395|gb|FL326614.1|FL326614
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211455408|gb|FL343588.1|FL343588
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211130568|gb|FL330782.1|FL330782
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211012723|gb|FL335935.1|FL335935
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211133468|gb|FL349783.1|FL349783
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211464944|gb|FL327919.1|FL327919
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211356808|gb|FL332694.1|FL332694
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211155346|gb|FL193256.1|FL193256
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211155344|gb|FL193254.1|FL193254
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211280131|gb|FL354652.1|FL354652
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGNCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211239604|gb|FL338007.1|FL338007
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211155342|gb|FL193252.1|FL193252
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211025945|gb|FL329790.1|FL329790
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|160481399|gb|EY254523.1|EY254523
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211432079|gb|FL309133.1|FL309133
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211287060|gb|FL337502.1|FL337502
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211086511|gb|FL340444.1|FL340444
EST:     GGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTG
genomic: GGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTG-CCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTG
EST: gi|211143697|gb|FL324988.1|FL324988
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211243597|gb|FL313136.1|FL313136
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211155347|gb|FL193257.1|FL193257
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211153739|gb|FL193240.1|FL193240
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211153744|gb|FL193245.1|FL193245
EST:     CGGCGTGAGTATGCTCGATGGTTGGTANCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGNATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211096961|gb|FL367333.1|FL367333
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211478133|gb|FL352004.1|FL352004
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211453287|gb|FL343581.1|FL343581
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211153737|gb|FL193238.1|FL193238
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211465954|gb|FL364649.1|FL364649
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211183895|gb|FL345854.1|FL345854
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACATCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211153743|gb|FL193244.1|FL193244
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAAAGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211163533|gb|FL327752.1|FL327752
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|31358997|gb|CD443354.1|CD443354
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAGG                         GA-CACTTTCTCAAA-GTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211155350|gb|FL193260.1|FL193260
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211153750|gb|FL193251.1|FL193251
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211093607|gb|FL328988.1|FL328988
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211308384|gb|FL348182.1|FL348182
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211297774|gb|FL337584.1|FL337584
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|31357653|gb|CD442010.1|CD442010
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211001384|gb|FL323102.1|FL323102
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211153749|gb|FL193250.1|FL193250
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211509614|gb|FL308773.1|FL308773
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211155351|gb|FL193261.1|FL193261
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211388119|gb|FL310430.1|FL310430
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211285077|gb|FL334450.1|FL334450
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211158735|gb|FL327705.1|FL327705
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211541249|gb|FL353983.1|FL353983
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211505017|gb|FL316062.1|FL316062
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
EST: gi|211175778|gb|FL359116.1|FL359116
EST:     CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG                         GAACACTTCCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA
genomic: CGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAGgtgcatatct ... ttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctctcttaggtgattattctgttaaccaacttattctcgtggtttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATA
                     tgttaac  putative branch site (score: 2)
                                            tttccat  putative PPT
            tgattatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcatatctattattcctttgtatcagtagacctcccaagtgtttgttgcaaatatgcagtatggtcccatttctcttttgtcctatttcatattcttcatacgtttaaggtcattgcctcttgctgttaaattttcagttttgctctcttaggtgattattctgttaaccaacttattctcgtggtttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA