1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cttacactttcatggttatgctttaatgagtaattattgtgttcccttttgttgacgtacttatatggtgtgatatatattcttacttttttttgcatagGTTCTAGATGAAGCAGATAGGATGCTGGATTTGGGTTTTGAACCTGAAGTCAGGGCAATTTTGAGCCAAACATCATCTG
species | Zea mays |
transcript | GRMZM2G076484_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGACCTTATTGAAATGGGTGTTTGCTGTCTTAATGAGGTTTCGTTTGTG GTTCTAGATGAAGCAGATAGGATGCTGGATTTGGGTTTTGAAACCTGA-GTEST: gi|74244222|gb|DT652136.1|DT652136
genomic: AAGACCTTATTGAAATGGGTGTTTGCTGTCTTAATGAGGTTTCGTTTGTGgtaagccagt ... ttttgcatagGTTCTAGATGAAGCAGATAGGATGCTGGATTTGGGTTTTGAA-CCTGAAGT
EST: AAGACCTTATTGAAATGGGTGTTTGCTGTCTTAATGAGGTTTCGTTTGTG -----A--TGAAGCAGATAGGATGCTGGATTTGGGEST: gi|149059470|gb|EE156955.2|EE156955
genomic: AAGACCTTATTGAAATGGGTGTTTGCTGTCTTAATGAGGTTTCGTTTGTGgtaagccagt ... ttttgcatagGTTCTAGATGAAGCAGATAGGATGCTGGATTTGGG
EST: AAGACCTTATTGAAATGGGTGTTTGCTGTCTTAATGAGGTTTCGTTTGTG GTTCTAGATGAAGCAGATAGGATGCTGGATTTGGGTTTTGAACCTGAAGTC
genomic: AAGACCTTATTGAAATGGGTGTTTGCTGTCTTAATGAGGTTTCGTTTGTGgtaagccagt ... ttttgcatagGTTCTAGATGAAGCAGATAGGATGCTGGATTTGGGTTTTGAACCTGAAGTC
cttttgttgacgtacttatatggtgtgatatatattcttacttttttttgcatagGTTCTAGATGAAGCAGATAGGATGCTGGATTTGGGTTTTGAACCTGAAGTCAGGGCAATTTTGAGCCAAACATCATCTG
ttcttac putative branch site (score: 2)
tattcttacttttttt CT-rich tract
atatatattcttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttacactttcatggttatgctttaatgagtaattattgtgttcccttttgttgacgtacttatatggtgtgatatatattcttacttttttttgcatagGTTCTAGATGAAGCAGATAGGATGCTGGATTTGGGTTTTGAACCTGAAGTCAGGGCAATTTTGAGCCAAACATCATCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG