Sequence
atgc intronic sequence ATGC exonic sequence...tgttctctattttctgatgttattatgctgagaaatctgctttacattatactaattagcgtattgtttccaaaaaaaacatttgattttacatatgcagCCTCCTGAGAACTGGAATGGGAATGGTGGTGTTGGGTTTGTGTCGAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTAAGGACATTAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G076206_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g40990.1 (Oryza sativa), 3'ss of exon 7
----------------------------------------------------------------------------------tgttctctattttctgatgttattatgctgagaaatc-tgctttacattatactaattagcgtattgtttccaaaaaaaacatttgattttacatatgcagCCTCCTGAGAACTGGAATGGGAATGGTGGTGTTGGGTTTGTGTCGAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTAAGGACATTAAG
| |||| | | || || || || | || || || ||||| | | || | | || || | | | |||| ||| ||| ||||||||| || | ||||||||| |||||||||||||||||| | ||||||||||||| | ||||| || || |||||| |||||| ||
gtttgttttctgttctgaggtctagtactttgtactgtggtgtgcaataatttcatgcctgaactgtctactttggtagtcccatcttctactacttactgcta--atactactatattatggcttgcattaaattc-ctaccatgcaccttacaccatcagc-tttgtttt--catgagcagCCTCCAGAAATCTGGAATGG------TGGTGTTGGGTTTGTGTCAATGGAAATGATCCAAACCCATTGCCCGGCACCTGCTGCTGACATTCAG
upper sequence: GRMZM2G076206_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv06s0009g01710.t01 (Vitis vinifera), 3'ss of exon 7
--tgttctctattttctgatgttattatgctgagaaatctgctttacattatactaattagcgtattgtttccaaaaaaaacatttgattttacatatgcagCCTCCTGAGAACTGGAATGGGAATGGTGGTGTTGGGTTTGTGTCGAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTAAGGACATTAAG
| ||| | || || | ||| | | | |||| | || |||| | | ||||| | || | | || | ||| ||||| ||||| |||||||| |||||||||||| ||||| ||||||||||| ||| | || || ||| | || || | | ||| ||
aaaataacctaaatagaaattctaatgggctctggatattccttttccatactttaat-aaaatgttgttgt-gactggaatgtgtttttatccatgctcagCCACCTGAAGGATGGAATGG------TGGTGTTGGGTTCGTGTCAAAGGAAATGATTCAAACCCACTGCCCACCTCCAGCAACCAATATTCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attatactaattagcgtattgtttccaaaaaaaacatttgattttacatatgcagCCTCCTGAGAACTGGAATGGGAATGGTGGTGTTGGGTTTGTGTCGAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTAAGGACATTAAG
aaaaaaaacatttgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgttctctattttctgatgttattatgctgagaaatctgctttacattatactaattagcgtattgtttccaaaaaaaacatttgattttacatatgcagCCTCCTGAGAACTGGAATGGGAATGGTGGTGTTGGGTTTGTGTCGAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTAAGGACATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - tgatgtt
- - - - - - - - - - - -tatgctg
- - - - - - - - - - - - - - - - - - ctgcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa