1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagcacggctaaatgtctttttgtggttatttttctgcgcctaacattcatatagaccatggctatctttttaagcaaatgcctcccaccttctgggtctctcgtttctagttccaatactgtattgaccttttcttttcttttccacgaatttggccgacagGTTTGACAAGAAGATCAGATATGCTTCTCGCAAGGCTAGGGCGGACGTGAGGAAGCGGGTCAAGGGACGGTTCATAAAGGCCGGTGAAGCGTACGACTAT
species | Zea mays |
transcript | GRMZM2G075562_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCAGAGATAGCGCTCTCACACGGTACAAGGAGAAGAAGAAGAGGAGAAA GTTTGACAAGAAGATCAGATATGCTTCTCGCAAGGCTAGGGCGGACGTGAGEST: gi|76293629|gb|DV033197.1|DV033197
genomic: AGCAGAGATAGCGCTCTCACACGGTACAAGGAGAAGAAGAAGAGGAGAAAgtaagcacgg ... tggccgacagGTTTGACAAGAAGATCAGATATGCTTCTCGCAAGGCTAGGGCGGACGTGAG
EST: AGCAGAGATAGCGCTCTCACACGGTACAAGGAGAAGAAGAAGAGGAGAAA GTTTGACAAGAAGATCAGATATGCTTCTCGCAAGGCTAGGGCGGACGTGAGEST: gi|211067844|gb|FL474744.1|FL474744
genomic: AGCAGAGATAGCGCTCTCACACGGTACAAGGAGAAGAAGAAGAGGAGAAAgtaagcacgg ... tggccgacagGTTTGACAAGAAGATCAGATATGCTTCTCGCAAGGCTAGGGCGGACGTGAG
EST: AGCAGAGATAGCGCTCTCACACGGTACAAGGAGAAGAAGAAGAGGAGAAA GTTTGACAAGAAGATCAGATATGCTTCTCGCAAGGCTAGGGCGGACGTGAGEST: gi|31909583|gb|CD650991.1|CD650991
genomic: AGCAGAGATAGCGCTCTCACACGGTACAAGGAGAAGAAGAAGAGGAGAAAgtaagcacgg ... tggccgacagGTTTGACAAGAAGATCAGATATGCTTCTCGCAAGGCTAGGGCGGACGTGAG
EST: AGCAGAGATAGCGCTCTCACACGGTACAAGGAGAAGAAGAAGAGGAGAAA GTTTGACAAGAAGATCAGATATGCTTCTCGCAAGGCTAGGGCGGACGTGAGEST: gi|47962223|gb|CN844932.1|CN844932
genomic: AGCAGAGATAGCGCTCTCACACGGTACAAGGAGAAGAAGAAGAGGAGAAAgtaagcacgg ... tggccgacagGTTTGACAAGAAGATCAGATATGCTTCTCGCAAGGCTAGGGCGGACGTGAG
EST: AGCAGAGATAGCGCTCTCACACGGTACAAGGAGAAGAAGAAGAGGAGAAA GTTTGACAAGAAGATCAGATATGCTTCTCGCAAGGCTAGGGCGGACGTGAGEST: gi|166519297|gb|EG250287.1|EG250287
genomic: AGCAGAGATAGCGCTCTCACACGGTACAAGGAGAAGAAGAAGAGGAGAAAgtaagcacgg ... tggccgacagGTTTGACAAGAAGATCAGATATGCTTCTCGCAAGGCTAGGGCGGACGTGAG
EST: ACGGTACAAGGAGAAGAAGAAGAGGAGAAA GTTTGACAAGAAGATCAGATACGCTTCTCGCAAGGCTAGGGCGGACGTGAG
genomic: ACGGTACAAGGAGAAGAAGAAGAGGAGAAAgtaagcacgg ... tggccgacagGTTTGACAAGAAGATCAGATATGCTTCTCGCAAGGCTAGGGCGGACGTGAG
tagttccaatactgtattgaccttttcttttcttttccacgaatttggccgacagGTTTGACAAGAAGATCAGATATGCTTCTCGCAAGGCTAGGGCGGACGTGAGGAAGCGGGTCAAGGGACGGTTCATAAAGGCCGGTGAAGCGTACGACTAT
tattgac putative branch site (score: 25)
ttttcttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcacggctaaatgtctttttgtggttatttttctgcgcctaacattcatatagaccatggctatctttttaagcaaatgcctcccaccttctgggtctctcgtttctagttccaatactgtattgaccttttcttttcttttccacgaatttggccgacagGTTTGACAAGAAGATCAGATATGCTTCTCGCAAGGCTAGGGCGGACGTGAGGAAGCGGGTCAAGGGACGGTTCATAAAGGCCGGTGAAGCGTACGACTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC