1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ccctcggttatctggtccttgcggtttactttggggttattactgtatatacccacatctgtcttctgtcatagcattaaaacatctgaaacaactgcagGTGCTTTTGCTCGATGAGATCACGGTTGATCTGGACGTGGTGACCAGGATGGACCTGCTTGGTTTCTTCAAGGAAGAGTGCGAGCAG
species | Zea mays |
transcript | GRMZM2G075336_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGCAGCGCCGCAGGGTGCAAATCTGCATGGGTCTTCTTCATCCATACAAG GTGCTTTTGCTCGATGAGATCACGGTTGATCTGGACGTGGTGACCAGGATGEST: gi|149028116|gb|EE154611.2|EE154611
genomic: GGCAGCGCCGCAGGGTGCAAATCTGCATGGGTCTTCTTCATCCATACAAGgtgatgttct ... acaactgcagGTGCTTTTGCTCGATGAGATCACGGTTGATCTGGACGTGGTGACCAGGATG
EST: GGCAGCGCCGCAGGGTGCAAATCTGCATGGGTCTTCTTCATCCATACAAG GTGCTTTTGCTCGATGAGATCACGGTTGATCTGGACGTGGTGACCAGGATGEST: gi|32838902|gb|CD978583.1|CD978583
genomic: GGCAGCGCCGCAGGGTGCAAATCTGCATGGGTCTTCTTCATCCATACAAGgtgatgttct ... acaactgcagGTGCTTTTGCTCGATGAGATCACGGTTGATCTGGACGTGGTGACCAGGATG
EST: GGCAGCGCCGCAGGGTGCAAATCTGCATGGGTCTTCTTCATCCATACAAG GTGCTTTTGCTCGATGAGATCACGGTTGATCTGGACGTGGTGACCAGGATGEST: gi|32924131|gb|CF028943.1|CF028943
genomic: GGCAGCGCCGCAGGGTGCAAATCTGCATGGGTCTTCTTCATCCATACAAGgtgatgttct ... acaactgcagGTGCTTTTGCTCGATGAGATCACGGTTGATCTGGACGTGGTGACCAGGATG
EST: GGCAGCGCCGCAGGGTGCAAATCTGCATGGGTCTTCTTCATCCATACAAG GTGCTTTTGCTCGATGAGATCACGGTTGATCTGGACGTGGTGACCAGGATGEST: gi|116823374|gb|EC866895.1|EC866895
genomic: GGCAGCGCCGCAGGGTGCAAATCTGCATGGGTCTTCTTCATCCATACAAGgtgatgttct ... acaactgcagGTGCTTTTGCTCGATGAGATCACGGTTGATCTGGACGTGGTGACCAGGATG
EST: GGCAGCGCCGCA-TGTGCAAATCTGCATGGGTCTTCTTCATCCATACAAG GTGCTTTTGCTCGATGAGATCACGGTTGATCTGGACGT-GTGACCAGGATGEST: gi|149026922|gb|EE046274.2|EE046274
genomic: GGCAGCGCCGCAGGGTGCAAATCTGCATGGGTCTTCTTCATCCATACAAGgtgatgttct ... acaactgcagGTGCTTTTGCTCGATGAGATCACGGTTGATCTGGACGTGGTGACCAGGATG
EST: GGCAGCGCCGCAGGGTGCAAATCTGCATGGGTCTTCTTCATCCATACAAG GTGCTTTTGCTCGATGAGATCACGGTTGATCTGGACGTGGTGACCAGGATG
genomic: GGCAGCGCCGCAGGGTGCAAATCTGCATGGGTCTTCTTCATCCATACAAGgtgatgttct ... acaactgcagGTGCTTTTGCTCGATGAGATCACGGTTGATCTGGACGTGGTGACCAGGATG
tatatacccacatctgtcttctgtcatagcattaaaacatctgaaacaactgcagGTGCTTTTGCTCGATGAGATCACGGTTGATCTGGACGTGGTGACCAGGATGGACCTGCTTGGTTTCTTCAAGGAAGAGTGCGAGCAG
attaaaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccctcggttatctggtccttgcggtttactttggggttattactgtatatacccacatctgtcttctgtcatagcattaaaacatctgaaacaactgcagGTGCTTTTGCTCGATGAGATCACGGTTGATCTGGACGTGGTGACCAGGATGGACCTGCTTGGTTTCTTCAAGGAAGAGTGCGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG