1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttggatgtttctgcaatcattatgcatactttctccttatctaatctctagtaaagaacgagctcttgtctgcctgacatattgtgttatgattcttagGGGTTACAACTATTGCTGGGGGGAAATCAGGCAGAGGAGGGCATGTTGACGGACCAAGTGATGAGGCAAAATTTTCTACTGATTTTGAAGTCCGTTACAT
species | Zea mays |
transcript | GRMZM2G075260_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTATGTGGCTGATGCCATGAACATGGCCATTAGAAAGATCAGTGATACAG GGGTTACAACTATTGCTNNNNNNNAATCAGGCAGAGGAGGGCATGTTGACGEST: gi|28873941|gb|CB329863.1|CB329863
genomic: CTATGTGGCTGATGCCATGAACATGGCCATTAGAAAGATCAGTGATACAGgtaagctaaa ... tgattcttagGGGTTACAACTATTGCTGGGGGGAAATCAGGCAGAGGAGGGCATGTTGACG
EST: CTATGTGGCTGATGCCATGAACATGGCCATTAGAAAGATCAGTGATACAG GGGTTACAACTATTGCTGGGGGGAAATCAGGCAGAGGAGGGCATGTTGACGEST: gi|211042152|gb|FL156954.1|FL156954
genomic: CTATGTGGCTGATGCCATGAACATGGCCATTAGAAAGATCAGTGATACAGgtaagctaaa ... tgattcttagGGGTTACAACTATTGCTGGGGGGAAATCAGGCAGAGGAGGGCATGTTGACG
EST: CTATGTGGCTGATGCCATGAACATGGCCATTAGAAAGATCAGTGATACAG GGGTTACAACTATTGCTGGGGGGAAATCAGGCAGAGGAGGGCATGTTGACGEST: gi|28909594|gb|CB331004.1|CB331004
genomic: CTATGTGGCTGATGCCATGAACATGGCCATTAGAAAGATCAGTGATACAGgtaagctaaa ... tgattcttagGGGTTACAACTATTGCTGGGGGGAAATCAGGCAGAGGAGGGCATGTTGACG
EST: CTATGTGGCTGATGCCATGAACATGGCCATTAGAAAGATCAG-GATACAG GGGTTACAACTATTGCTGGGGGGAAATCAGGCAGAGGAGGGCATGTTGACGEST: gi|31357778|gb|CD442135.1|CD442135
genomic: CTATGTGGCTGATGCCATGAACATGGCCATTAGAAAGATCAGTGATACAGgtaagctaaa ... tgattcttagGGGTTACAACTATTGCTGGGGGGAAATCAGGCAGAGGAGGGCATGTTGACG
EST: CTATGTGGCTGATGCCATGAACATGGCCATTAGAAAGATCAGTGATACAG GGGTTACAACTATTGCTGGGGGGAAATCAGGCAGAGGAGGGCATGTTGAEST: gi|28931006|gb|CB334367.1|CB334367
genomic: CTATGTGGCTGATGCCATGAACATGGCCATTAGAAAGATCAGTGATACAGgtaagctaaa ... tgattcttagGGGTTACAACTATTGCTGGGGGGAAATCAGGCAGAGGAGGGCATGTTGA
EST: CTATGTGGCTGATGCCATGAACATGGCCATTAGAAAGATCAGTGATACAG GGGTTACAACTATTGCTGGGGGGAAATCAGGCAGAGGAGGGCATGTTGACG
genomic: CTATGTGGCTGATGCCATGAACATGGCCATTAGAAAGATCAGTGATACAGgtaagctaaa ... tgattcttagGGGTTACAACTATTGCTGGGGGGAAATCAGGCAGAGGAGGGCATGTTGACG
tctctagtaaagaacgagctcttgtctgcctgacatattgtgttatgattcttagGGGTTACAACTATTGCTGGGGGGAAATCAGGCAGAGGAGGGCATGTTGACGGACCAAGTGATGAGGCAAAATTTTCTACTGATTTTGAAGTCCGTTACAT
gcctgac putative branch site (score: 3)
ttctt putative PPT
ttatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttggatgtttctgcaatcattatgcatactttctccttatctaatctctagtaaagaacgagctcttgtctgcctgacatattgtgttatgattcttagGGGTTACAACTATTGCTGGGGGGAAATCAGGCAGAGGAGGGCATGTTGACGGACCAAGTGATGAGGCAAAATTTTCTACTGATTTTGAAGTCCGTTACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - tgtttct
- - - - - - - - - - - -tgcatac
- - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtgtt