1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgaggctaagaacatgtctatcgatgacgcctgaattaggcgaacagacgtttttgtttcatagtgttgtggtcgtgctaaattcctgctctgcgggttcatgtgtgctatgtagTTCGCAAGGAGTCCAGGGAAGTCAGGATCACACTTCAACCCAAGCAGTGATTTGTTCCAACCTAATGAAAAGAAGGACATCATAACATCAACGGCATCCT
species | Zea mays |
transcript | GRMZM2G074401_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATTGCGGTTCACCATGCCGTTCCCCTTGCTCGCATTCCCGTTATACTTG TTCGCAAGGAGTCCAGGGAAGTCAGGATCACACTTCAACCCAAGCAGTGATEST: gi|32843026|gb|CD982707.1|CD982707
genomic: AATTGCGGTTCACCATGCCGTTCCCCTTGCTCGCATTCCCGTTATACTTGgtgaggctaa ... tgctatgtagTTCGCAAGGAGTCCAGGGAAGTCAGGATCACACTTCAACCCAAGCAGTGAT
EST: AATTGCGGTTTACCATGCCGTTCCCCTTGCTCGCATTCCCGTTATACTTG TTCGCAAGGAGTCCAGGGAAGTCAGGATCACACTTCAACCCAAGCAGTGATEST: gi|60401022|gb|DN233829.1|DN233829
genomic: AATTGCGGTTCACCATGCCGTTCCCCTTGCTCGCATTCCCGTTATACTTGgtgaggctaa ... tgctatgtagTTCGCAAGGAGTCCAGGGAAGTCAGGATCACACTTCAACCCAAGCAGTGAT
EST: AATTGCGGTTCACCATGCCGTTCCCCTTGCTCGCATTCCCATTATACTTG TTCGCAAGGAGTCCAGGGAAGTCAGGATCACACTTCAACCCAAGCAGTGATEST: gi|32939492|gb|CF044311.1|CF044311
genomic: AATTGCGGTTCACCATGCCGTTCCCCTTGCTCGCATTCCCGTTATACTTGgtgaggctaa ... tgctatgtagTTCGCAAGGAGTCCAGGGAAGTCAGGATCACACTTCAACCCAAGCAGTGAT
EST: AATTGCGGTTTACCATGCCGTTCCCCTTGCTCGCATTCCCGTTATACTTG TTCGCAAGGAGTCCAGGGAAGTCAGGATCACACTTCAACCCAAGCAGTGATEST: gi|32938850|gb|CF043669.1|CF043669
genomic: AATTGCGGTTCACCATGCCGTTCCCCTTGCTCGCATTCCCGTTATACTTGgtgaggctaa ... tgctatgtagTTCGCAAGGAGTCCAGGGAAGTCAGGATCACACTTCAACCCAAGCAGTGAT
EST: AATTGCGGTTTACCATGCCGTTCCCCTTGCTCGCATTCCCGTTATACTTG TTCGCAAGGAGTCCAGGGAAGTCAGGATCACACTTCAACCCAAGCAGTGATEST: gi|148965401|gb|EE016203.2|EE016203
genomic: AATTGCGGTTCACCATGCCGTTCCCCTTGCTCGCATTCCCGTTATACTTGgtgaggctaa ... tgctatgtagTTCGCAAGGAGTCCAGGGAAGTCAGGATCACACTTCAACCCAAGCAGTGAT
EST: AATTGCGGTTCACCATGCCGTTCCCCTTGCTCGCATTCCCGTTATACTTG TTCGCAAGGAGTCCAGGGAAGTCAGGATCACACTTCAACCCAAGCAGTGAT
genomic: AATTGCGGTTCACCATGCCGTTCCCCTTGCTCGCATTCCCGTTATACTTGgtgaggctaa ... tgctatgtagTTCGCAAGGAGTCCAGGGAAGTCAGGATCACACTTCAACCCAAGCAGTGAT
atagtgttgtggtcgtgctaaattcctgctctgcgggttcatgtgtgctatgtagTTCGCAAGGAGTCCAGGGAAGTCAGGATCACACTTCAACCCAAGCAGTGATTTGTTCCAACCTAATGAAAAGAAGGACATCATAACATCAACGGCATCCT
tgctaaa putative branch site (score: 127)
taaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggctaagaacatgtctatcgatgacgcctgaattaggcgaacagacgtttttgtttcatagtgttgtggtcgtgctaaattcctgctctgcgggttcatgtgtgctatgtagTTCGCAAGGAGTCCAGGGAAGTCAGGATCACACTTCAACCCAAGCAGTGATTTGTTCCAACCTAATGAAAAGAAGGACATCATAACATCAACGGCATCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG