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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtacttgtcaatcatatataatttgcaaagaattatgtcaacgcaaccaatagttgcttatgcttgcttcaacagAATTTGGTCAACTTGAATTTCATGCAAGAGAAGAAAGAAGCTGATTTTCGTTACGGACTTGTCCGTGTTAGAGAAAATGCGGAATCGATTGCTTTTTATG

Basic information

species Zea mays
transcript GRMZM2G074103_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G074103_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g11946.1 (Oryza sativa), 3'ss of exon 4
-------gtatgtacttgtcaatcatatataatttgcaaagaa--------ttatgtcaacgcaaccaatagttgcttatgcttgcttcaacagAATTTGGTCAACTTGAATTTCATGCAAGAGAAGAAAGAAGCTGATTTTCGTTACGGACTTGTCCGTGTTAGAGAAAATGCGGAATCGATTGCTTTTTATG
       |  | |     | | | || |  || |||||  |||        || | ||     ||| ||| | ||  ||| ||||     ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||
gtaagttgcttatcaacattatttatctccaacttgcattgaacatactctttctttctttaaaactaattgctggctattcttgtacggacagAATTTGGTCAACTTGAACTTCATGCAAGAAAAGAAAGAAGCAGATTTTCGTTATGGACTTGTCCGAGTTAGAGAAAATGCTGAATCAATTGCTTTTTATG

upper sequence: GRMZM2G074103_T02 (Zea mays), 3'ss of exon 4
lower sequence: AT1G54350.1 (Arabidopsis thaliana), 3'ss of exon 3
--------------------gta-tgtacttgtcaatcatatataatttgcaaagaattatgtcaacgcaaccaatagttgcttatgcttgcttcaacagAATTTGGTCAACTTGAATTTCATGCAAGAGAAGAAAGAAGCTGATTTTCGTTACGGACTTGTCCGTGTTAGAGAAAATGCGGAATCGATTGCTTTTTATG
                    | | |||  |||||  ||   | |  |  ||     ||| || |   |   |  ||      |    ||||  |   |||    | || ||  | || ||  | |||||||||||||| ||||| ||||||||| | ||||| || || || |||||||| ||||| |||||||| ||||
gtacaacaatgcctcgttaagcagtgtgattgtc--tctattctgttccgcttcagattttggctttgttgc--attaacattccctcttgtgtt--cagGGACTAGTGAATCTCAACTTTCTACAAGAGAAGAAAGAGGCTGACTTTCGTTACAGCCTTGTACGAGTGAGGGAAAATGCTGAATCTATTGCTTTCTATG

upper sequence: GRMZM2G074103_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv19s0085g01190.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------------gtatgtacttgtcaatcatatataatttg-caaagaattatgtcaacgcaaccaatagttgct--tatgcttgcttcaacagAATTTGGTCAACTTGAATTTCATGCAAGAGAAGAAAGAAGCTGATTTTCGTTACGGACTTGTCCGTGTTAGAGAAAATGCGGAATCGATTGCTTTTTATG
                              | || | ||| || | | | || ||     | |  ||  | | |   ||  ||||||    |  |     ||      |||    |||| ||| | |||||| ||||||||||||||||||| ||||||||||| |||||||| ||| || | |||||||| ||||| ||||| || ||| 
gtaattttcctacctttttgaaatcattattttgaatttg-cagtgaaacattatgcaatagaacatattcttactccagtcaataggaaatatttcatctgtgatttcagGGACTGGTAAACCTAAATTTCTTGCAAGAGAAGAAAGAAGCAGATTTTCGTTATGGACTTGTGCGTATTCGTGAAAATGCTGAATCAATTGCGTTCTATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgcaaagaattatgtcaacgcaaccaatagttgcttatgcttgcttcaacagAATTTGGTCAACTTGAATTTCATGCAAGAGAAGAAAGAAGCTGATTTTCGTTACGGACTTGTCCGTGTTAGAGAAAATGCGGAATCGATTGCTTTTTATG
                                          cttgcttc  CT-rich tract
      aaagaattat  TA-rich tract