1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgaaaagccagttccttcagtggggagaccttttcgttatgatcatttttattgtttttgttatttaacaattgatcattcttttgactaacaatagcacattggaaataatgcagTTTGGCTGATGTCCTTGCAAATCCATTCCATGCACTGTTTTATGTGGTCTTCATGCTGTCAGCTTGCGCTCTGTTCTCAAAAACGTGGATTGAAGTTTCT
species | Zea mays |
transcript | GRMZM2G073498_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATTCTGTTCCTGTTGGTGGTCTTGCTTACTATGTAACTGCCCCATCAAG TTTGGCTGATGTCCTTGCAAATCCATTCCATGCACTGTTTTATGTGGTCTTEST: gi|211341222|gb|FL045918.1|FL045918
genomic: CATTCTGTTCCTGTTGGTGGTCTTGCTTACTATGTAACTGCCCCATCAAGgtgaaaagcc ... aataatgcagTTTGGCTGATGTCCTTGCAAATCCATTCCATGCACTGTTTTATGTGGTCTT
EST: ATTCTTCTTCCTGTTGGTGGTCTTGCTTACTATGTAACTGCCCCATCAAG TTTGGCTGATGTCCTTGCAAATCCATTCCATGCACTGTTTTATEST: gi|71425883|gb|DR806950.1|DR806950
genomic: ATTCTG-TTCCTGTTGGTGGTCTTGCTTACTATGTAACTGCCCCATCAAGgtgaaaagcc ... aataatgcagTTTGGCTGATGTCCTTGCAAATCCATTCCATGCACTGTTTTAT
EST: CATTCTGTTCCTGTTGGTGGTCTTGCTTACTATGTAACTGCCCCATCAAG TTTGGCTGATGTCCTTGCAAATCCATTCCATGCACTGTTTTATGTGGTCTTEST: gi|32858247|gb|CD997928.1|CD997928
genomic: CATTCTGTTCCTGTTGGTGGTCTTGCTTACTATGTAACTGCCCCATCAAGgtgaaaagcc ... aataatgcagTTTGGCTGATGTCCTTGCAAATCCATTCCATGCACTGTTTTATGTGGTCTT
EST: CATTCTGTTCCTGTTGGTGGTCTTGCTTACTATGTAACTGCCCCATCAAG TTTGGCTGATGTCCTTGCAAATCCATTCCATGCACTGTTTTATGTGGTCTTEST: gi|211338836|gb|FL045913.1|FL045913
genomic: CATTCTGTTCCTGTTGGTGGTCTTGCTTACTATGTAACTGCCCCATCAAGgtgaaaagcc ... aataatgcagTTTGGCTGATGTCCTTGCAAATCCATTCCATGCACTGTTTTATGTGGTCTT
EST: CATTCTGTTCCTGTTGGTGGTCTTGCTTACTATGTAACTGCCCCATCAAG TTTGGCTGATGTCCTTGCAAATCCATTCCATGCACTGTTTTATGTGGTCTTEST: gi|31354346|gb|CD438703.1|CD438703
genomic: CATTCTGTTCCTGTTGGTGGTCTTGCTTACTATGTAACTGCCCCATCAAGgtgaaaagcc ... aataatgcagTTTGGCTGATGTCCTTGCAAATCCATTCCATGCACTGTTTTATGTGGTCTT
EST: CATTCTGTTCCTGTTGGTGGTCTTGCTTACTATGTAACTGCCCCATCAAG TTTGGCTGATGTCCTTGCAAATCCATTCCATGCACTGTTTTATGTGGTCTT
genomic: CATTCTGTTCCTGTTGGTGGTCTTGCTTACTATGTAACTGCCCCATCAAGgtgaaaagcc ... aataatgcagTTTGGCTGATGTCCTTGCAAATCCATTCCATGCACTGTTTTATGTGGTCTT
tatttaacaattgatcattcttttgactaacaatagcacattggaaataatgcagTTTGGCTGATGTCCTTGCAAATCCATTCCATGCACTGTTTTATGTGGTCTTCATGCTGTCAGCTTGCGCTCTGTTCTCAAAAACGTGGATTGAAGTTTCT
gactaac putative branch site (score: 398)
aaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaaagccagttccttcagtggggagaccttttcgttatgatcatttttattgtttttgttatttaacaattgatcattcttttgactaacaatagcacattggaaataatgcagTTTGGCTGATGTCCTTGCAAATCCATTCCATGCACTGTTTTATGTGGTCTTCATGCTGTCAGCTTGCGCTCTGTTCTCAAAAACGTGGATTGAAGTTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG