Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ttcgtctcggtgctcgccctcctcgtggtgtcttattggttggttctgcaaatgcttttagtaatggaaactactgcttgacaattgtgtttgttaccataatgtaattctttctctacaggtgggtcttccagggactggaaagacacttcttgcaaaagccgtagcaggagaagcagaagTCCCATTCATAAGTTGCTCTGCTAGTGAATTTGTTGAGCTATATGTAGGCA

Basic information

species Zea mays
transcript GRMZM2G072865_T05
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G072865_T05 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g43350.1 (Oryza sativa), 3'ss of exon 4
ttcgtctcggtgctcgccctcctcgtggtgtcttattggttggttctgcaaatgcttttagtaatggaaactactgcttgacaattgtgtttgttaccataatgtaattctttctctacaggtgggtcttccagggactggaaagacacttcttgcaaaagccgtagcaggagaagcagaagTCCCATTCATAAGTTGCTCTGCTAGTGAATTTGTTGAGCTATATGTAGGCA
                                      ||  ||||||||     ||| |||||||   | |  |||| ||| |  || ||||| || || ||||||||| || | |||||||||| |||||||| ||||||||||| |||||||||||||| || ||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||             
--------------------------------------gtcagttctgcagtca-tttaagtaatgatgaatgttgctggactagagtttttgt-actatgatgtaattcattatttacagGTGGGCCTTCCAGGAACTGGAAAGACGCTTCTTGCAAAAGCTGTCGCAGGGGAAGCTGAAGTCCCATTCATAAGTTGCTCTGCAAGTGAATTTGTGGAGT------------

upper sequence: GRMZM2G072865_T05 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA02G39040.1 (Glycine max), 3'ss of exon 5
ttcgtctcggtgctcgccctcctcgtg-gtgtcttattggttggttctgcaaatgcttttagtaatggaaactactgcttgacaattgtgtttgttaccataatgtaattctttctctacaggtgggtcttccagggactggaaagacacttcttgcaaaagccgtagcaggagaagcagaagTCCCATTCATAAGTTGCTCTGCTAGTGAATTTGTTGAGCTATATGTAGGCA
                  ||| ||||  |||  |||||  |  |    |  | |  ||    | ||      |     |||| |  |  ||  || |  ||       || | ||| |||||||||||||||| ||||| || |||||  | || ||||| || || ||||| ||||| || || ||||| |||||||| ||||||||||| ||||| |||             
------------------ctcatcgtatgtggattatttat-agccaagttactttttcatattattattgttttaatttgaaacgtaggta-gtaaatatc-cactgttttatct-tacagGTGGGTCTTCCTGGGACAGGTAAGACTTTACTGGCAAAGGCTGTGGCAGGGGAAGCTGATGTGCCATTTATAAGTTGTTCTGCTAGTGAGTTTGTAGAGT------------

upper sequence: GRMZM2G072865_T05 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA0028S00210.2 (Glycine max), 3'ss of exon 4
ttcgtctcggtgctcgccctcctcgtggtgtcttattggttggttctgcaaatgcttttagtaatggaaactactgcttgacaattgtgtttgttaccataatgtaattctttctctacaggtgggtcttccagggactggaaagacacttcttgcaaaagccgtagcaggagaagcagaagTCCCATTCATAAGTTGCTCTGCTAGTGAATTTGTTGAGCTATATGTAGGCA
               |   |  |     | |  | || | ||  | |   |    ||||| || ||     |   | ||||||  |  | | || |  ||  | |  |  || |  |||||||||||||||| || || || |||||  | |||||||| || || || || ||||| || || ||||| |||||||| ||||||||||| || || ||              
---------------gaaatgttttcacttttgtctttgctgcatgtttgaggatttttaatattg----ttttaggttgacatctaggct-gtgaatatc-tctcttgattaccttacagGTGGGTCTTCCTGGCACAGGTAAGACTTTACTTGCAAAGGCTGTGGCTGGGGAAGCTGATGTGCCATTTATAAGTTGTTCTGCTAGTGAGTTCGTAGAAT------------

upper sequence: GRMZM2G072865_T05 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA14G37090.1 (Glycine max), 3'ss of exon 5
ttcgtctcggtgctcgccctcctcgtggtgtcttattggttggttctgcaaatgcttttagtaatggaaactactgcttgacaattgtgtttgttaccataatgtaattctttctct-acaggtgggtcttccagggactggaaagacacttcttgcaaaagccgtagcaggagaagcagaagTCCCATTCATAAGTTGCTCTGCTAGTGAATTTGTTGAGCTATATGTAGGCA
              | |  |    ||||  | ||  | |     |   |   |  | ||| || ||     |     ||||||    |||  ||    |  ||  | |  ||| ||| ||||||||||||||| ||||| || |||||  | || ||||| || || ||||| ||||| || || ||||| |||||||| ||||||||||| ||||| |||             
--------------cacagtgtatgtggattatttatagccaagttaccttttcatattattattg----ttttaatttgaca----tgtaggtagtaaatatccactgttttatcttacagGTGGGTCTTCCTGGGACAGGTAAGACTTTACTGGCAAAGGCTGTGGCAGGGGAAGCTGATGTGCCATTTATAAGTTGTTCTGCTAGTGAGTTTGTAGAGT------------

upper sequence: GRMZM2G072865_T05 (Zea mays), 3'ss of exon 4
lower sequence: AT3G47060.1 (Arabidopsis thaliana), 3'ss of exon 4
-ttcgtctcggtgctcgccctcctcgtggtgtcttattg-gttggttctgcaaat--gcttttagtaatggaaactactgcttgacaattgtgtttgttaccataatgtaattctttctctacaggtgggtcttccagggactggaaagacacttcttgcaaaagccgtagcaggagaagcagaagTCCCATTCATAAGTTGCTCTGCTAGTGAATTTGTTGAGCTATATGTAGGCA
 |  || |      | |   ||    |  | |  ||||  ||   |        |   | ||| || |    | || || ||| | |||  | |   ||       ||      ||  | | ||||| |||||||| || || || || || ||||||||||| || || || || ||||| |||||||| ||||||||||||||||| ||||| ||||| ||||            
gtgagttttatcatttgatttcactttattcttatattacgtatatatcatggtttaacgtttggttacaagagct-ctcctttagaatgatatgcctt-------tgactcctttcttttccagGTTGGTCTTCCCGGAACAGGGAAAACCCTTCTTGCAAAGGCTGTTGCTGGGGAAGCTGAAGTCCCCTTCATAAGTTGCTCTGCAAGTGAGTTTGTAGAGC------------

upper sequence: GRMZM2G072865_T05 (Zea mays), 3'ss of exon 4
lower sequence: AT5G58870.1 (Arabidopsis thaliana), 3'ss of exon 4
ttcgtctcggtgctcgccctcctcgtggtgtcttattggttggttctgcaaatgcttttagtaatggaaactactgcttgacaattgtgtttgttaccataatgtaattctttctctacaggtgggtcttccagggactggaaagacacttcttgcaaaagccgtagcaggagaagcagaagTCCCATTCATAAGTTGCTCTGCTAGTGAATTTGTTGAGCTATATGTAGGCA
         | | |        | ||     ||||| ||    ||||  |  || |||  |     | ||    || ||   |  | |     |||      | |    || | |    |||| |||||||| || || || || || |||||||||||||| || || || ||| | || || |||||||||||||||||||| ||||| ||||| ||||            
-------gtgagtttaataatgtagttacaacttat-ggccatttct-taggtggtttatgc----gcaatgtttggttactatctttagaatttatggctttatttccctgttttggtagGTCGGTCTTCCTGGAACAGGGAAAACCCTTCTTGCAAAAGCTGTTGCTGGGGAATCTGATGTTCCATTCATAAGTTGCTCTGCAAGTGAGTTTGTAGAGC------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32925973|gb|CF030785.1|CF030785
EST:     GAGTTCTTAAGGAACCCAGAAAGATATA                         TCCCATTCATAAGTTGCTCTGCTAGTGAATTTGTTGAGCTATATGTAGGCA
genomic: GAGTTCTTAAGGAACCCAGAAAGATATAttcgtctcgg ... gaagcagaagTCCCATTCATAAGTTGCTCTGCTAGTGAATTTGTTGAGCTATATGTAGGCA