Sequence
atgc intronic sequence ATGC exonic sequence...tcagcaaaccttttgttgaactcaggctgtagctcccctttcttgagaagtttggttttgccatcattgtcatgcgtgcttgtttttttgtgaagtgcagCTTGATGAGCATGTGGAGGGGTATGTACGAGTGCCATCAAGTTCAGACCCACATCGTGCAGCAGCTGGAGTACCTGAACAATGCTCGGAATACCAATCCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G071599_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os09g36760.1 (Oryza sativa), 3'ss of exon 3
tcagcaaaccttttgttgaact-caggctgtagctcccctttcttgagaagtttggttttgccatcattgtcatgcgtgcttgttttttt---gtgaagtgcagCTTGATGAGCATGTGGAGGGGTATGTACGAGTGCCATCAAGTTCAGACCCACATCGTGCAGCAGCTGGAGTACCTGAACAATGCTCGGAATACCAATCCG
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----taattattttctggaagtacatttcctttcttcagcaccatgcctatgcttttttttccattctcatagagtgttccttttttttatgaatgaattccagCTTGATGAGTATGTGGAGGGGCATGTATGAGTGTCATCAAGTACAGACTCACATGGTGCAGCAGCTTGAGTACCTCAACAATTCCTTGAGCACTAACCCA
upper sequence: GRMZM2G071599_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA01G36920.1 (Glycine max), 3'ss of exon 3
tcagcaaaccttttgttgaactcaggctgtagctcccctttcttgagaagtttggttttgccatcattgtcatgcgtgcttgtttttttgtgaagt--gcagCTTGATGAGCATGTGGAGGGGTATGTACGAGTGCCATCAAGTTCAGACCCACATCGTGCAGCAGCTGGAGTACCTGAACAATGCTCGGAATACCAATCCG
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--attcattttcttcttgtgtttatagataagtttatcctaataatgctaagaaagaaagaaataagcctttctcagcattgtgttcttgttatgttggcagATTAATGTGCATGTGGAGAAGCATGTACGAATGCCATCAAGTCCAGAAGCACATAGTTCAGCAGCTAGAGTACCTCAATACCATACCATCAAACAACCCC
upper sequence: GRMZM2G071599_T02 (Zea mays), 3'ss of exon 3
lower sequence: AT3G51290.1 (Arabidopsis thaliana), 3'ss of exon 3
tcagcaaaccttttgttgaactcaggctgtagctcccctttcttgagaagtttggttttgccatcattgtcatgcgtgcttgtttttttgtgaagtgcagCTTGATGAGCATGTGGAGGGGTATGTACGAGTGCCATCAAGTTCAGACCCACATCGTGCAGCAGCTGGAGTACCTGAACAATGCTCGGAATACCAATCCG------------------
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------gtttgttttgtgcattc---ccattgcttcattaacctaaagtatcttatgttg--gtcaatgtgaacaaggttcttgtatgaatgtaatgtaggctaatgtgtatgtggagGAGTATGTACGAGAGCCACCAGGTTCAAACCCATATTGTGCAGCAGCTTAAGTACCTTAACACCATCCCCTCCACTGAACCAACATCTGAGCTTCACCGA
upper sequence: GRMZM2G071599_T02 (Zea mays), 3'ss of exon 3
lower sequence: AT3G51290.2 (Arabidopsis thaliana), 3'ss of exon 3
tcagcaaaccttttgttgaactcaggctgtagctcccctttcttgagaagtttggttttgccatcattgtcatgcgtgcttgtttttttgtgaagtgcagCTTGATGAGCATGTGGAGGGGTATGTACGAGTGCCATCAAGTTCAGACCCACATCGTGCAGCAGCTGGAGTACCTGAACAATGCTCGGAATACCAATCCG
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------gtttgttttgtgcattc---ccattgcttcattaacctaaagtatcttatgttg--gtcaatgtgaacaaggttcttgtatgaatgtaatgtagGCTAATGTGTATGTGGAGGAGTATGTACGAGAGCCACCAGGTTCAAACCCATATTGTGCAGCAGCTTAAGTACCTTAACACCATCCCCTCCACTGAACCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32856288|gb|CD995969.1|CD995969EST: CTCAGAGAATCCGGNAGCCTATTTCCCCAGCTTCTTGAGCTGATTGCTGG CTTGATGAGCATGTGGAGGGGTATGTACGAGTGCCATCAAGTTCAGACCCA
genomic: CTCAGAGAATCC-G-AG-CTATTTCCCCAGCTTCTTGAGCTGATTGCTGGgttagtacaa ... tgaagtgcagCTTGATGAGCATGTGGAGGGGTATGTACGAGTGCCATCAAGTTCAGACCCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agaagtttggttttgccatcattgtcatgcgtgcttgtttttttgtgaagtgcagCTTGATGAGCATGTGGAGGGGTATGTACGAGTGCCATCAAGTTCAGACCCACATCGTGCAGCAGCTGGAGTACCTGAACAATGCTCGGAATACCAATCCG
tttttttgt CT-rich tract
ttgttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcagcaaaccttttgttgaactcaggctgtagctcccctttcttgagaagtttggttttgccatcattgtcatgcgtgcttgtttttttgtgaagtgcagCTTGATGAGCATGTGGAGGGGTATGTACGAGTGCCATCAAGTTCAGACCCACATCGTGCAGCAGCTGGAGTACCTGAACAATGCTCGGAATACCAATCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
-cagcaaa
- - - - - -tttgttg
- - - - - - - - - - - - -gctgtag
- - - - - - - - - - - - - - - - - - - tttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcgtg