1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gctcttgctaccccacgttttcagaaatggaccgttgcccttccatgtagccagtaaaagcagcacagtttactcatttttatttgtgttccttctgcagTATGTCCACTTTCTCCAACGCAAGTACTCTCTGAACTCATTCAACCTGCTGGGCCACACTGCTCCAGCCCAAGCTGGGTCACTCCTGCTAGTGGGACCAT
species | Zea mays |
transcript | GRMZM2G071378_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCTAATCGCGGCTGTTATAGCTGTTTGGAGCACAGCTTTGCAACAATAT TATGTCCACTTTCTCCAACGCAAGTACTCTCTGAACTCATTCAACCTGCTGEST: gi|148931458|gb|EC874447.2|EC874447
genomic: GTCTAATCGCGGCTGTTATAGCTGTTTGGAGCACAGCTTTGCAACAATATgtaagtttta ... ccttctgcagTATGTCCACTTTCTCCAACGCAAGTACTCTCTGAACTCATTCAACCTGCTG
EST: TCTAATCGCGGCTGTTATAGCTGTTTGGAGCACAGCTTTGCAAACA-TAT TATGTCCACTTTCTCCAACGCAAGTACTCTCTGAACTCATTCAACCTGCTEST: gi|149078292|gb|EE167056.2|EE167056
genomic: TCTAATCGCGGCTGTTATAGCTGTTTGGAGCACAGCTTTGCAA-CAATATgtaagtttta ... ccttctgcagTATGTCCACTTTCTCCAACGCAAGTACTCTCTGAACTCATTCAACCTGCT
EST: GTCTAATCGCGGCTGTTATAGCTGTTTGGAGCACAGCTTTGCAACAATAT TATGTCCACTTTTCTCCAACGCAAGTEST: gi|148968976|gb|EE019670.2|EE019670
genomic: GTCTAATCGCGGCTGTTATAGCTGTTTGGAGCACAGCTTTGCAACAATATgtaagtttta ... ccttctgcagTATGTCCACTTT-CTCCAACGCAAGT
EST: GTCTAATCGCGGCTGTTATAGCTGTTTGGAGCACAGCTTTGCAACAATAT TATGTCCACTTTCTCCAACGCAAGTACTCTCTGAACTCATTTCA-CCTGCTEST: gi|76282823|gb|DV022391.1|DV022391
genomic: GTCTAATCGCGGCTGTTATAGCTGTTTGGAGCACAGCTTTGCAACAATATgtaagtttta ... ccttctgcagTATGTCCACTTTCTCCAACGCAAGTACTCTCTGAACTCATT-CAACCTGCT
EST: GTCTAATCGCGGCTGTTATAGCTGTTTGGAGCACAGCTTTGCAACAATAT TATGTCCACTTTCTCCCACGCAAGTACTCTCTGAAC
genomic: GTCTAATCGCGGCTGTTATAGCTGTTTGGAGCACAGCTTTGCAACAATATgtaagtttta ... ccttctgcagTATGTCCACTTTCTCCAACGCAAGTACTCTCTGAAC
tgtagccagtaaaagcagcacagtttactcatttttatttgtgttccttctgcagTATGTCCACTTTCTCCAACGCAAGTACTCTCTGAACTCATTCAACCTGCTGGGCCACACTGCTCCAGCCCAAGCTGGGTCACTCCTGCTAGTGGGACCAT
tttgtgttccttct CT-rich tract
tttactcatttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctcttgctaccccacgttttcagaaatggaccgttgcccttccatgtagccagtaaaagcagcacagtttactcatttttatttgtgttccttctgcagTATGTCCACTTTCTCCAACGCAAGTACTCTCTGAACTCATTCAACCTGCTGGGCCACACTGCTCCAGCCCAAGCTGGGTCACTCCTGCTAGTGGGACCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - -tgctacc
- - - - - - - - - - - - - - - -ccgttgc
- - - - - - - - - - - - - - - - - - - - - ccatgta
- - - - - - - - - - - - - - - - - - - - - - - - - -cagtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtgtt