1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttataatctctttactctggcccatcaatattaaatgaatgttatagctcttgctgtcatagatagctatcaatatctatctatttttatggcttgttagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTACAACCTTTTGGAACATGAGTTTCTACCTCTGGACCTTGCATCAAAAGTGC
species | Zea mays |
transcript | GRMZM2G070487_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCTTCAAGAGCATCTCTTCTATCTGAGTTG GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTACEST: gi|32945556|gb|CF050375.1|CF050375
genomic: CCTTCAAGAGCATCTCTTCTATCTGAGTTGgtatgtgctg ... ggcttgttagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: CCTTCAAGAGCATCTCTTCTATCTGAGTTG GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTEST: gi|31355755|gb|CD440112.1|CD440112
genomic: CCTTCAAGAGCATCTCTTCTATCTGAGTTGgtatgtgctg ... ggcttgttagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGT
EST: CCTTCAAGAGCATCTCTTCTATCTGAGTTG GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTACEST: gi|61118285|gb|DN559246.1|DN559246
genomic: CCTTCAAGAGCATCTCTTCTATCTGAGTTGgtatgtgctg ... ggcttgttagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: CCTTCAAGAGCATCTCTTCTATCTGAGTTG GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTACEST: gi|32931023|gb|CF035835.1|CF035835
genomic: CCTTCAAGAGCATCTCTTCTATCTGAGTTGgtatgtgctg ... ggcttgttagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: CCTTCAAGAGCATCTCTTCTATCTGAGTTG GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTA
genomic: CCTTCAAGAGCATCTCTTCTATCTGAGTTGgtatgtgctg ... ggcttgttagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTA
agctcttgctgtcatagatagctatcaatatctatctatttttatggcttgttagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTACAACCTTTTGGAACATGAGTTTCTACCTCTGGACCTTGCATCAAAAGTGC
tatcaatatctatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttataatctctttactctggcccatcaatattaaatgaatgttatagctcttgctgtcatagatagctatcaatatctatctatttttatggcttgttagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTACAACCTTTTGGAACATGAGTTTCTACCTCTGGACCTTGCATCAAAAGTGC
- - - - - - - - - - cccatca
- - - - - - - - - - - - - - - - - atgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - -tgctgtc