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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaccagctttcagttttccagtttgtggctgctatcccaagaaacaactgtgattctctgattctgaactaactgttcaatatctgcatatctgcagCACCGAACTGGCTGTGTGGTCGGATGCTTGAGGAAGCTGCAGGAATGGTGCTTGTCTTCAGTCTTGGACGAGTACCATCGCTTTGCCGCTGCGAAAGCGA

Basic information

species Zea mays
transcript GRMZM2G070315_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070315_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os06g10650.1 (Oryza sativa), 3'ss of exon 4
----------gtaagaccagctttcagttttccagtttgtggctgctatcccaagaaacaactgtgattctctgattctgaactaactgttc-aatatctgcatatctgcagCACCGAACTGGCTGTGTGGTCGGATGCTTGAGGAAGCTGCAGGAATGGTGCTTGTCTTCAGTCTTGGACGAGTACCATCGCTTTGCCGCTGCGAAAGCGA
            |   ||  |  | |  | | || || |  ||   ||||     || |||     | |||  ||| || |||| |||| || ||| | | | ||||| |||||||| || ||||| || || || |||||||||||||| ||| ||||||||||||||||||| || ||||||||||| ||||| ||||||||||| ||||
gtaagcttaatcagttcccacactaaactctgcaatt-gctgccattatcttccaaagcaag---aactctgagatcctaaactgactgctccaatgtttccctatcttcagCACCGCACCGGCTGCGTCGTGGGGTGCTTGAGGAAGCTTCAGAAATGGTGCTTGTCTTCAGTGTTCGACGAGTACCAGCGCTTCGCCGCTGCGAAGGCGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32925414|gb|CF030226.1|CF030226
EST:     ACCCAAGAAACCAACCTCTGCTTATCCATTGCAAGAGAGGCAAG                         CACCGAACTGGCTGTGTGGTCGGGTGCTTGAGGAAGCTGCAGGAATGGTGC
genomic: ACCCAAGAAACCAACCTCTGCTTATCCATTGCAAGAGAGGCAAGgtaagaccag ... atatctgcagCACCGAACTGGCTGTGTGGTCGGATGCTTGAGGAAGCTGCAGGAATGGTGC
EST: gi|149028367|gb|EE286122.2|EE286122
EST:     ACCCAAGAAACCAACCTCTGCTTATCCATTGCAAGAGAGGCAAG                         CACCGAACTGGCTGTGTGGTCGGATGCTTGAGGAAGCTGCAGGAATGGTGC
genomic: ACCCAAGAAACCAACCTCTGCTTATCCATTGCAAGAGAGGCAAGgtaagaccag ... atatctgcagCACCGAACTGGCTGTGTGGTCGGATGCTTGAGGAAGCTGCAGGAATGGTGC
EST: gi|148939874|gb|EC884586.2|EC884586
EST:     ACCCAAGAAACCAACCTCTGCTTATCCATTGCAAGAGAGGCAAG                         CACCGAACTGGCTGTGTGGTCGGATGCTTGAGGAAGCTGCAGGAATGGTGC
genomic: ACCCAAGAAACCAACCTCTGCTTATCCATTGCAAGAGAGGCAAGgtaagaccag ... atatctgcagCACCGAACTGGCTGTGTGGTCGGATGCTTGAGGAAGCTGCAGGAATGGTGC
EST: gi|89758678|gb|DY687773.1|DY687773
EST:     ACCCAAGAAACCAACCTCTGCTTATCCATTGCAAGAGAGGCAAG                         CACCGAACTGGCTGTGTGGTCGGATGCTTGAGGAAGCTGCAGGAATGGTGC
genomic: ACCCAAGAAACCAACCTCTGCTTATCCATTGCAAGAGAGGCAAGgtaagaccag ... atatctgcagCACCGAACTGGCTGTGTGGTCGGATGCTTGAGGAAGCTGCAGGAATGGTGC
EST: gi|211209829|gb|FK949987.1|FK949987
EST:     ACCCAAGAAACCAACCTCTGCTTATCCATTGCAAGAGAGGCAAG                         CACCGAACTGGCTGTGTGGTCGGGTGCTTGAGGAAGCTGCAGGAATGGTGC
genomic: ACCCAAGAAACCAACCTCTGCTTATCCATTGCAAGAGAGGCAAGgtaagaccag ... atatctgcagCACCGAACTGGCTGTGTGGTCGGATGCTTGAGGAAGCTGCAGGAATGGTGC
EST: gi|148937447|gb|EC881628.2|EC881628
EST:     ACCCAAGAAACCAACCTCTGCTTATCCATTGCAAGAGAGGCAAG                         CACCGAACTGGCTGTGTGGTCGGATGCTTGAGGAAGCTGCAGGAATGGTGC
genomic: ACCCAAGAAACCAACCTCTGCTTATCCATTGCAAGAGAGGCAAGgtaagaccag ... atatctgcagCACCGAACTGGCTGTGTGGTCGGATGCTTGAGGAAGCTGCAGGAATGGTGC
EST: gi|148940906|gb|EC885740.2|EC885740
EST:     ACCCAAGAAACCAACCTCTGCTTATCCATTGCAAGAGAGGCAAG                         CACCGAACTGGCTGTGTGGTCGGATGCTTGAGGAAGCTGCAGGAATGGTGC
genomic: ACCCAAGAAACCAACCTCTGCTTATCCATTGCAAGAGAGGCAAGgtaagaccag ... atatctgcagCACCGAACTGGCTGTGTGGTCGGATGCTTGAGGAAGCTGCAGGAATGGTGC
EST: gi|149028366|gb|EE154635.2|EE154635
EST:     ACCCAAGAAACCAACCTCTGCTTATCCATTGCAAGAGAGGCAAG                         CACCGAACTGGCTGTGTGGTCGGATGCTTGAGGAAGCTGCAGGAATGGTGC
genomic: ACCCAAGAAACCAACCTCTGCTTATCCATTGCAAGAGAGGCAAGgtaagaccag ... atatctgcagCACCGAACTGGCTGTGTGGTCGGATGCTTGAGGAAGCTGCAGGAATGGTGC
EST: gi|89249010|gb|DY620796.1|DY620796
EST:     ACCCAAGAAACCAACCTCTGCTTATCCATTGCAAGAGAGGCAAG                         CACCGAACTGGCTGTGTGGTCGGATGCTTGAGGAAGCTGCAGGAATGGTGC
genomic: ACCCAAGAAACCAACCTCTGCTTATCCATTGCAAGAGAGGCAAGgtaagaccag ... atatctgcagCACCGAACTGGCTGTGTGGTCGGATGCTTGAGGAAGCTGCAGGAATGGTGC
EST: gi|149083277|gb|EE172563.2|EE172563
EST:     ACCCCAAGAAACCAACCTCTGCTTATCCATTGCAAGAGAGGCAAG                         CACCGAACTGGCTGTGTGGTCGGATGCTTGAGGAAACTGCAGGAATGGTGC
genomic: ACCC-AAGAAACCAACCTCTGCTTATCCATTGCAAGAGAGGCAAGgtaagaccag ... atatctgcagCACCGAACTGGCTGTGTGGTCGGATGCTTGAGGAAGCTGCAGGAATGGTGC
EST: gi|76290784|gb|DV030352.1|DV030352
EST:     ACCCAAGAAACCAACCTCTGCTTATCCATTGCAAGAGAGGCAAG                         CACCGAACTGGCTGTGTGGTCGGATGCTTGAGGAAGCTGCAGGAATGGTGC
genomic: ACCCAAGAAACCAACCTCTGCTTATCCATTGCAAGAGAGGCAAGgtaagaccag ... atatctgcagCACCGAACTGGCTGTGTGGTCGGATGCTTGAGGAAGCTGCAGGAATGGTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacaactgtgattctctgattctgaactaactgttcaatatctgcatatctgcagCACCGAACTGGCTGTGTGGTCGGATGCTTGAGGAAGCTGCAGGAATGGTGCTTGTCTTCAGTCTTGGACGAGTACCATCGCTTTGCCGCTGCGAAAGCGA
                        aactaac  putative branch site (score: 1)
                                 ttcaatat  TA-rich tract