1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtctgtctttttttttgtgaaagtagagtagcaatttgctcaaggtttctatggatgttctgatgcacaagtactgatggtgagatctgttgctctgaattatgttttacagTGACAAGTTAGTGGAGCAAGCTGTTGGAATGCCATCAGTTGCCCAAATATTCAAGGTCCATAGTGAAGCCTTCTTTCGGGATAATGAG
species | Zea mays |
transcript | GRMZM2G070218_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTGTGGGGAAGATTATGTCTGAAGTCTTGGGTTATTCGTTCTTTGATAG TGACAAGTTAGTGGAGCAAGCTGTTGGAATGCCATCAGTTGCCCAAATATTEST: gi|60338581|gb|DN205554.1|DN205554
genomic: ACTGTGGGGAAGATTATGTCTGAAGTCTTGGGTTATTCGTTCTTTGATAGgtctgtcttt ... tgttttacagTGACAAGTTAGTGGAGCAAGCTGTTGGAATGCCATCAGTTGCCCAAATATT
EST: ACTGTGGGGAAGATTATGTCTGAAGTCTTGGGTTATTCGTTCTTTGATAG TGACAAGTTAGTGGAGCAAGCTGTTGGAATGCCATCAGTTGCCCAAATATTEST: gi|211466253|gb|FL386709.1|FL386709
genomic: ACTGTGGGGAAGATTATGTCTGAAGTCTTGGGTTATTCGTTCTTTGATAGgtctgtcttt ... tgttttacagTGACAAGTTAGTGGAGCAAGCTGTTGGAATGCCATCAGTTGCCCAAATATT
EST: ACTGTGGGGAAGATTATGTCTGAAGTCTTGGGTTATTCGTTCTTTGATAG TGACAAGTTAGTGGAGCAAGCTGTTGGAATGCCATCAGTTGCCCAAATATTEST: gi|211063379|gb|FL406022.1|FL406022
genomic: ACTGTGGGGAAGATTATGTCTGAAGTCTTGGGTTATTCGTTCTTTGATAGgtctgtcttt ... tgttttacagTGACAAGTTAGTGGAGCAAGCTGTTGGAATGCCATCAGTTGCCCAAATATT
EST: ACTGTGGGGAAGATTATGTCTGAAGTCTTGGGTTA-TCGTTCTTTGATAG TGACAAGTTAGTGGAGCAAGCTGTTGGAATGCCATCAGTTGCCCAAATATTEST: gi|211387313|gb|FL389279.1|FL389279
genomic: ACTGTGGGGAAGATTATGTCTGAAGTCTTGGGTTATTCGTTCTTTGATAGgtctgtcttt ... tgttttacagTGACAAGTTAGTGGAGCAAGCTGTTGGAATGCCATCAGTTGCCCAAATATT
EST: ACTGTGGGGAAGATTATGTCTGAAGTCTTGGGTTATTCGTTCTTTGATAG TGACAAGTTAGTGGAGCAAGCTGTTGGAATGCCATCAGTTGCCCAAATATTEST: gi|149095243|gb|EE180868.2|EE180868
genomic: ACTGTGGGGAAGATTATGTCTGAAGTCTTGGGTTATTCGTTCTTTGATAGgtctgtcttt ... tgttttacagTGACAAGTTAGTGGAGCAAGCTGTTGGAATGCCATCAGTTGCCCAAATATT
EST: ACTGTGGGGAAGATTATGTCTGAAGTCTTGGGTTATTCGTTCTTTGATAG TGACAAGTTAGTGGAGCAAGCTGTTGGAATGCCATCAGTTGCCCAAATATTEST: gi|93281433|gb|EB673697.1|EB673697
genomic: ACTGTGGGGAAGATTATGTCTGAAGTCTTGGGTTATTCGTTCTTTGATAGgtctgtcttt ... tgttttacagTGACAAGTTAGTGGAGCAAGCTGTTGGAATGCCATCAGTTGCCCAAATATT
EST: GGGTTATTCGTTCTTTGATAG TGACAAGTTAGTGGAGCAAGCTGTTGGAATGCCATCAGTTGCCCAAATATT
genomic: GGGTTATTCGTTCTTTGATAGgtctgtcttt ... tgttttacagTGACAAGTTAGTGGAGCAAGCTGTTGGAATGCCATCAGTTGCCCAAATATT
ttctgatgcacaagtactgatggtgagatctgttgctctgaattatgttttacagTGACAAGTTAGTGGAGCAAGCTGTTGGAATGCCATCAGTTGCCCAAATATTCAAGGTCCATAGTGAAGCCTTCTTTCGGGATAATGAG
tactgat putative branch site (score: 2)
tgaattatgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtctttttttttgtgaaagtagagtagcaatttgctcaaggtttctatggatgttctgatgcacaagtactgatggtgagatctgttgctctgaattatgttttacagTGACAAGTTAGTGGAGCAAGCTGTTGGAATGCCATCAGTTGCCCAAATATTCAAGGTCCATAGTGAAGCCTTCTTTCGGGATAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC