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...ctatactgcaccgtcacttgtatattaagaaaaatggcttccatgggtgacaaattggtgaactaaatatcgtcaaattctcattgaaatgtactgtcagATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAGAGCTAAGAGCTAAAAGAGCTGATATGCAG
species | Zea mays |
transcript | GRMZM2G069916_T05 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTG ATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAGEST: gi|67033512|gb|CO462261.1|CO462261
genomic: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTGgtaattcctc ... gtactgtcagATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
EST: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTG ATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAGEST: gi|71330193|gb|DR801854.1|DR801854
genomic: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTGgtaattcctc ... gtactgtcagATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
EST: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTG ATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAGEST: gi|76292705|gb|DV032273.1|DV032273
genomic: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTGgtaattcctc ... gtactgtcagATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
EST: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTG ATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAGEST: gi|26559091|gb|CA831326.1|CA831326
genomic: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTGgtaattcctc ... gtactgtcagATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
EST: GGAGAAAATGGCACGAAGTTGATGCCTTTG ATCTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAEST: gi|76920400|gb|DV168155.1|DV168155
genomic: GGAGAAAATGGCA-GAAGTTGATGCCTTTGgtaattcctc ... gtactgtcagAT-TTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAA
EST: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTG ATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAGEST: gi|149014011|gb|EE043527.2|EE043527
genomic: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTGgtaattcctc ... gtactgtcagATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
EST: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTG ATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAGEST: gi|211142601|gb|FL018647.1|FL018647
genomic: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTGgtaattcctc ... gtactgtcagATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
EST: AGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTG ATTTTGAAGGGAGAACTGACGACAAAATAAAGGCCCAGGAAGTAGTGGAAGEST: gi|88756297|gb|DY540438.1|DY540438
genomic: AGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTGgtaattcctc ... gtactgtcagATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
EST: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTG ATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAGEST: gi|148952947|gb|EE152420.2|EE152420
genomic: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTGgtaattcctc ... gtactgtcagATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
EST: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTG ATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAGEST: gi|87157671|gb|DY402460.1|DY402460
genomic: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTGgtaattcctc ... gtactgtcagATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
EST: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTG ATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAGEST: gi|148932069|gb|EC875423.2|EC875423
genomic: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTGgtaattcctc ... gtactgtcagATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
EST: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTG ATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAGEST: gi|71312972|gb|DR793008.1|DR793008
genomic: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTGgtaattcctc ... gtactgtcagATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
EST: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTG ATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAGEST: gi|149000973|gb|EE038213.2|EE038213
genomic: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTGgtaattcctc ... gtactgtcagATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
EST: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTG ATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAGEST: gi|88756334|gb|DY540475.1|DY540475
genomic: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTGgtaattcctc ... gtactgtcagATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
EST: GCATCTGTCAAAACAGATAAAGGAGAGAATGGCAGAAGTTGATGCCTTTG ATTTTGAAGGGAGAACTGATGACAAAATAGAGGCCCAGGAAGTAGTGGAAGEST: gi|211024315|gb|FL368572.1|FL368572
genomic: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTGgtaattcctc ... gtactgtcagATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
EST: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTG ATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAGEST: gi|9952467|gb|BE639050.1|BE639050
genomic: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTGgtaattcctc ... gtactgtcagATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
EST: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTG ATTTTGAAGGGAGAACTGA
genomic: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTGgtaattcctc ... gtactgtcagATTTTGAAGGGAGAACTGA
ggtgacaaattggtgaactaaatatcgtcaaattctcattgaaatgtactgtcagATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAGAGCTAAGAGCTAAAAGAGCTGATATGCAG
aactaaa putative branch site (score: 2)
aactaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatactgcaccgtcacttgtatattaagaaaaatggcttccatgggtgacaaattggtgaactaaatatcgtcaaattctcattgaaatgtactgtcagATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAGAGCTAAGAGCTAAAAGAGCTGATATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT