Skip to another splice site:
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 5'  3'   		3  
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 5'  3'   		6  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcgtgataccttcacttcactttcgggccctacctacctcgcgtgccctgccgtccgtcccctcgcccccccggcgacgactcactcgctgctgtgcaagcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCTCCACCTCGCCGCCAGGCAGGGCCGCCCCGGCTGCGTGCAGGCGCTGCTG

Basic information

species Zea mays
transcript GRMZM2G069162_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069162_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g02130.1 (Oryza sativa), 3'ss of exon 4
gtgagcgtgataccttcacttcactttcgggccctacctacctcgcgtgccctgccgtccgtcccctcgcccccccggcgacgactcactcgctgctgtgcaagcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCTCCACCTCGCCGCCAGGCAGGGCCGCCCCGGCTGCGTGCAGGCGCTGCTG
      |||| | | ||      || ||| |       |  ||   || |             | || |    | | | ||   |||||| ||||||||  |||| ||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||| || ||||| ||||||||||| || || || |||||||||| | |||||
------gtgagatcatcctcatcctgtcgtg-------tggctttggtacagctatagaatagctctggatgtctctgtga--gctcacttgctgctgtcgaagcttggcagGGGTTTCGCCCGGTTCGTCAACGTCAGGGACGACCACGGCGCCACTCCGCTGCATCTCGCGGCCAGGCAGGGGCGGCCGGGGTGCGTGCAGGTGTTGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149010154|gb|EE041967.2|EE041967
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|148932463|gb|EC876197.2|EC876197
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|91876743|gb|EB406700.1|EB406700
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|211326970|gb|FL003075.1|FL003075
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACG
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACG
EST: gi|50325257|gb|CO520383.1|CO520383
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGNGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|74232733|gb|DT640647.1|DT640647
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|78089777|gb|DV518151.1|DV518151
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|71449909|gb|DR830959.1|DR830959
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|91049871|gb|EB160289.1|EB160289
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|148938650|gb|EC882982.2|EC882982
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|71313857|gb|DR793525.1|DR793525
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|149112247|gb|EE295151.2|EE295151
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|76913183|gb|DV165033.1|DV165033
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|149085044|gb|EE174553.2|EE174553
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|71320952|gb|DR797192.1|DR797192
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|148967178|gb|EE018364.2|EE018364
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|71432311|gb|DR813361.1|DR813361
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|50328517|gb|CO523643.1|CO523643
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|76014676|gb|DT941846.1|DT941846
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|71449368|gb|DR830418.1|DR830418
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|78081585|gb|DV509997.1|DV509997
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|148982737|gb|EE028556.2|EE028556
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|50335142|gb|CO530268.1|CO530268
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|149071938|gb|EE160325.2|EE160325
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|149037744|gb|EE155406.2|EE155406
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|71768259|gb|DR966196.1|DR966196
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|78080357|gb|DV508769.1|DV508769
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|148949274|gb|EC894718.2|EC894718
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|76013282|gb|DT940452.1|DT940452
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|148953967|gb|EC899355.2|EC899355
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|148945991|gb|EC891286.2|EC891286
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|67014789|gb|CO443538.1|CO443538
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCGACTCATG                         GGGATTCGCCCGGTTCGTCAACGTGAGGGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|93283971|gb|EB676235.1|EB676235
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|33466680|gb|CF243729.1|CF243729
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|94472164|gb|EB701122.1|EB701122
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|149078678|gb|EE167469.2|EE167469
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|71423338|gb|DR806006.1|DR806006
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|149111573|gb|EE190708.2|EE190708
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|148951595|gb|EC897330.2|EC897330
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|76284670|gb|DV024238.1|DV024238
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|94472171|gb|EB701129.1|EB701129
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|148952353|gb|EC898166.2|EC898166
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|71772502|gb|DR970434.1|DR970434
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|76010938|gb|DT938108.1|DT938108
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|101399477|gb|EB821611.1|EB821611
EST:     CGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|91054246|gb|EB164664.1|EB164664
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|149096259|gb|EE181967.2|EE181967
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|91054647|gb|EB165065.1|EB165065
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|50323631|gb|CO518757.1|CO518757
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|93281560|gb|EB673824.1|EB673824
EST:     CGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|148987274|gb|EE031110.2|EE031110
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|71304552|gb|DR788396.1|DR788396
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|149085919|gb|EE175447.2|EE175447
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|148982960|gb|EE028846.2|EE028846
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|71438367|gb|DR819417.1|DR819417
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|149113145|gb|EE295904.2|EE295904
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|211331298|gb|FL003101.1|FL003101
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGC
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGC
EST: gi|149070411|gb|EE158812.2|EE158812
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|101388700|gb|EB816333.1|EB816333
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|71764076|gb|DR962013.1|DR962013
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|89761791|gb|DY689663.1|DY689663
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|148995650|gb|EE034862.2|EE034862
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|91873603|gb|EB403560.1|EB403560
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|148966812|gb|EE017914.2|EE017914
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
EST: gi|148948691|gb|EC898606.2|EC898606
EST:     CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATG                         GGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT
genomic: CTGCAGGCCATCCTCACGGCGGCGCGGACCACGCCGGTGGCCAACTCATGgtgagcgtga ... agcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccgtcccctcgcccccccggcgacgactcactcgctgctgtgcaagcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCTCCACCTCGCCGCCAGGCAGGGCCGCCCCGGCTGCGTGCAGGCGCTGCTG
                         gactcac  putative branch site (score: 2)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagcgtgataccttcacttcactttcgggccctacctacctcgcgtgccctgccgtccgtcccctcgcccccccggcgacgactcactcgctgctgtgcaagcctggcagGGGTTTCGCTCGGTTCGTCAACGTGAGAGACGACCACGGCGCCACGCCGCTCCACCTCGCCGCCAGGCAGGGCCGCCCCGGCTGCGTGCAGGCGCTGCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGGCGCCA