1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agaatattctcaactagcatattcttatgcttattgctttttaatagtgtgttagttttagcaccttataaatacttaccttagctctatttctacttagGTGAATGACACTGTGGGGACGTTAGCTCTAGGTCATTATCACGATGAGGATACAGTGGCTGCTGTGATAATCGGTGCTGGCACCAATGCTTGCTATATCG
species | Zea mays |
transcript | GRMZM2G068913_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAAATGAAGCTCTTGCTAGGAGTGGACTAAATGTGCGAGTTACTGCACTG GTGAATGACACTGTGGGGACGTTAGCTCTAGGTCATTATCACGATGAGGATEST: gi|31909437|gb|CD650918.1|CD650918
genomic: TAAATGAAGCTCTTGCTAGGAGTGGACTAAATGTGCGAGTTACTGCACTGgtaggttgtt ... ttctacttagGTGAATGACACTGTGGGGACGTTAGCTCTAGGTCATTATCACGATGAGGAT
EST: ATGAAGCTCTTGCTAGGAG-GGACTAAATGTGCGAGTTACTGCACTG G-GAATGACACTGTGGGGACGTTAGCTCTAGGTCATTATCACGATGAGGAT
genomic: ATGAAGCTCTTGCTAGGAGTGGACTAAATGTGCGAGTTACTGCACTGgtaggttgtt ... ttctacttagGTGAATGACACTGTGGGGACGTTAGCTCTAGGTCATTATCACGATGAGGAT
agtgtgttagttttagcaccttataaatacttaccttagctctatttctacttagGTGAATGACACTGTGGGGACGTTAGCTCTAGGTCATTATCACGATGAGGATACAGTGGCTGCTGTGATAATCGGTGCTGGCACCAATGCTTGCTATATCG
tacttac putative branch site (score: 114)
ctctatttctactt putative PPT
ttataaatactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaatattctcaactagcatattcttatgcttattgctttttaatagtgtgttagttttagcaccttataaatacttaccttagctctatttctacttagGTGAATGACACTGTGGGGACGTTAGCTCTAGGTCATTATCACGATGAGGATACAGTGGCTGCTGTGATAATCGGTGCTGGCACCAATGCTTGCTATATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - atgctta
- - - - - - - - - - - - - - - - - tgctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tagcacc