1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttttagttcatccaattattggccatctatctgatatttggttgctgaaggccctgataattcttcattgacttttcttttcattatctgtcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATGAAGGATACAATACCACAACTGAATTACAAGTTTGGGATGTTCTGGACTT
species | Zea mays |
transcript | GRMZM2G068690_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAG CAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATGEST: gi|87156444|gb|DY401233.1|DY401233
genomic: TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAGgtaacacggc ... tcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
EST: TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAG CAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATGEST: gi|71430393|gb|DR811443.1|DR811443
genomic: TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAGgtaacacggc ... tcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
EST: TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAG CAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATGEST: gi|22541939|gb|BU092377.1|BU092377
genomic: TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAGgtaacacggc ... tcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
EST: TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAG CAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATGEST: gi|160481371|gb|EY254285.1|EY254285
genomic: TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAGgtaacacggc ... tcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
EST: TTGAAAGAGATAAACTACAATGCTGCAG CAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATGEST: gi|93281796|gb|EB674060.1|EB674060
genomic: TTGAAAGAGATAAACTACAATGCTGCAGgtaacacggc ... tcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
EST: TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAG CAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATGEST: gi|26558592|gb|CA830827.1|CA830827
genomic: TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAGgtaacacggc ... tcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
EST: TCCAGTCTGCAGAGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAG CAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
genomic: TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAGgtaacacggc ... tcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
tgaaggccctgataattcttcattgacttttcttttcattatctgtcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATGAAGGATACAATACCACAACTGAATTACAAGTTTGGGATGTTCTGGACTT
cattgac putative branch site (score: 54)
cttttcttttcattat CT-rich tract
ttttcttttcattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttagttcatccaattattggccatctatctgatatttggttgctgaaggccctgataattcttcattgacttttcttttcattatctgtcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATGAAGGATACAATACCACAACTGAATTACAAGTTTGGGATGTTCTGGACTT
- - - - catccaa
- - - - - - - - - - - - - - - - - - - - gttgctg
- - - - - - - - - - - - - - - - - - - - - - - - -ggccctg