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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttagttcatccaattattggccatctatctgatatttggttgctgaaggccctgataattcttcattgacttttcttttcattatctgtcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATGAAGGATACAATACCACAACTGAATTACAAGTTTGGGATGTTCTGGACTT

Basic information

species Zea mays
transcript GRMZM2G068690_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G068690_T04 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g43870.6 (Oryza sativa), 3'ss of exon 4
---------------------------------ttttagttcatccaattat---tggccatctatctgatatttggttgctgaaggccctgataattcttcattgacttttctttt--cattatctgtcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATGAAGGATACAATACCACAACTGAATTACAAGTTTGGGATGTTCTGGACTT
                                  ||||  |  || | || |   ||    |  | |     |||  |  ||      |   ||  ||  ||  |  || |||||||  |||| |        ||||||||||||||||| || |||| |||||||  |||||||| || |||||||||||||||||||| |   || |||||| |||||||||||||||||||||||
gtaacattggcttcagttccaaccctttcaatcatttaagttgtcaacttgtatatgaatttgaaaccaggctttcatatcttggtaactgaatgctttctctctcgctcttcttttttcatttttctgtttctgcagCAATGGATGAAAACAATGAGTTCCTTCAGCTGATTCTTAGTAGCAATGATGAAGGATACAATGCTGGAAGTGAATTCCAAGTTTGGGATGTTCTGGACTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71430393|gb|DR811443.1|DR811443
EST:     TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAG                         CAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
genomic: TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAGgtaacacggc ... tcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
EST: gi|22472364|gb|BU036844.1|BU036844
EST:     TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAG                         CAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
genomic: TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAGgtaacacggc ... tcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
EST: gi|87156444|gb|DY401233.1|DY401233
EST:     TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAG                         CAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
genomic: TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAGgtaacacggc ... tcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
EST: gi|93281796|gb|EB674060.1|EB674060
EST:     TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAG                         CAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
genomic: TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAGgtaacacggc ... tcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
EST: gi|22541939|gb|BU092377.1|BU092377
EST:     TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAG                         CAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
genomic: TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAGgtaacacggc ... tcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
EST: gi|160481371|gb|EY254285.1|EY254285
EST:     TTGAAAGAGATAAACTACAATGCTGCAG                         CAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
genomic: TTGAAAGAGATAAACTACAATGCTGCAGgtaacacggc ... tcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
EST: gi|26558592|gb|CA830827.1|CA830827
EST:     TCCAGTCTGCAGAGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAG                         CAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
genomic: TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAGgtaacacggc ... tcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaggccctgataattcttcattgacttttcttttcattatctgtcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATGAAGGATACAATACCACAACTGAATTACAAGTTTGGGATGTTCTGGACTT
                    cattgac  putative branch site (score: 3)
                          cttttcttttcattat  CT-rich tract
                           ttttcttttcattat  TA-rich tract