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gtaagtacttcacatcactggcacttattttgataatccttcccaaatttgcatttacttactgaaatttactgattttgtagCTAGCTGCAGCGGTGGCCTTCCTTATTGCTAGATACTTTGCCAGAGAGAGAATTCTTAAATTGGTTGAAGGAAATAAGAAGTTTCTGGCAATTGATAAGG
species | Zea mays |
transcript | GRMZM2G068271_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACAATTATTGTCTCAGTCAGTGGAACG CTAGCTGCAGCGGTGGCCTTCCTTATTGCTAGATACTTTGCCAGAGAGAGAEST: gi|71757264|gb|DR955201.1|DR955201
genomic: ACAATTATTGTTTCAGTCGGTGGAACGgtaagtactt ... gattttgtagCTAGCTGCAGCGGTGGCCTTCCTTATTGCTAGATACTTTGCCAGAGAGAGA
EST: TATTATTTGGTAATGTGACTGGTACAATTATTGTTTCAGTCGGTGGAACG CTAGCTGCAGCGGTGGCCTTCCTTATTGCTAGATACTTTGCCAGAGAGAGAEST: gi|211409239|gb|FL441030.1|FL441030
genomic: TATTATTTGGTAATGTGACTGGTACAATTATTGTTTCAGTCGGTGGAACGgtaagtactt ... gattttgtagCTAGCTGCAGCGGTGGCCTTCCTTATTGCTAGATACTTTGCCAGAGAGAGA
EST: TATTATTTGGAAACGTGACTGGTACAATTATTGTTTCAGTCGGTGGAACG CTAGCTGCAGCGGTGGCCTTCCTTATTGCTAGATACTTTGCCAGAGAGAGAEST: gi|58029461|gb|CX724888.1|CX724888
genomic: TATTATTTGGTAATGTGACTGGTACAATTATTGTTTCAGTCGGTGGAACGgtaagtactt ... gattttgtagCTAGCTGCAGCGGTGGCCTTCCTTATTGCTAGATACTTTGCCAGAGAGAGA
EST: TATTATTTGGTAATGTGACTGGTACAATTATTGTTTCAGTCGGTGGAACG CTAGCTGCAGCGGTGGCCTTCCTTATTGCTAGATACTTTGCCAGAGAGAGA
genomic: TATTATTTGGTAATGTGACTGGTACAATTATTGTTTCAGTCGGTGGAACGgtaagtactt ... gattttgtagCTAGCTGCAGCGGTGGCCTTCCTTATTGCTAGATACTTTGCCAGAGAGAGA
tttgataatccttcccaaatttgcatttacttactgaaatttactgattttgtagCTAGCTGCAGCGGTGGCCTTCCTTATTGCTAGATACTTTGCCAGAGAGAGAATTCTTAAATTGGTTGAAGGAAATAAGAAGTTTCTGGCAATTGATAAGG
aaatttactgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtacttcacatcactggcacttattttgataatccttcccaaatttgcatttacttactgaaatttactgattttgtagCTAGCTGCAGCGGTGGCCTTCCTTATTGCTAGATACTTTGCCAGAGAGAGAATTCTTAAATTGGTTGAAGGAAATAAGAAGTTTCTGGCAATTGATAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT