Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacacagtccattgcttgtttaccgaaactctcggtgtgtgtctctgtactgacggcgatccatcttgcttcctgggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCCCAACTGGCACGAGTACCCCCAGTGGAAGCCGACGAAGCTGTCTGCTCTT

Basic information

species Zea mays
transcript GRMZM2G068193_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G068193_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g40170.1 (Oryza sativa), 3'ss of exon 4
-----------gtaacacagtccattgct-----tgtttaccgaaactctcggtgtgtgtctctgtac-----tgacggcgatccatcttgcttcctgggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCCCAACTGGCACGAGTACCCCCAGTGGAAGCCGACGAAGCTGTCTGCTCTT
           ||  |    || |||| |     || |  | |  |  || |  | || |    ||       ||  || |||  |||||| ||  | ||    ||||||||| ||||||||||| || || || |||||||| ||  ||||||| || |||||||||||||||||||||||||| ||  ||||  |||||| ||||
gtactgtgcctgtttcctcatcaattgttctttgtgctcgctggcatacttgaggggtataatcgtgtattcatggtggtgatttatcttgattgtttggttc-cagGTTGCTGGGCACCCCAAATGAGCAAGTTTGGCCAGGAGTGAGCAAGCTACCTAACTGGCACGAGTACCCCCAGTGGAATCCCTCGAAAGTGTCTGATCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38229860|gb|CF920173.1|CF920173
EST:     CCACTTTTNCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAANAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|74241826|gb|DT649740.1|DT649740
EST:     CACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTTCA-                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGC
genomic: CACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTT-CAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGC
EST: gi|12972075|gb|BG267801.1|BG267801
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|78105695|gb|DV524113.1|DV524113
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|91873817|gb|EB403774.1|EB403774
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|50336340|gb|CO531466.1|CO531466
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|18383612|gb|BM416812.1|BM416812
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|76018820|gb|DT945990.1|DT945990
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|86471384|gb|DY237754.1|DY237754
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|76018821|gb|DT945991.1|DT945991
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCCCATCTTCAA                         GTTGCTTGGCACCCCAAACGAACA
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACA
EST: gi|60340813|gb|DN207786.1|DN207786
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|71329066|gb|DR801242.1|DR801242
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGGCAGGCGT
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGT
EST: gi|60351484|gb|DN218457.1|DN218457
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|211319984|gb|FK976018.1|FK976018
EST:     TCASTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|89247623|gb|DY619409.1|DY619409
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|211420173|gb|FL463555.1|FL463555
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|211247009|gb|FL481691.1|FL481691
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|78024362|gb|DV492749.1|DV492749
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|78105696|gb|DV524114.1|DV524114
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|86468767|gb|DY235137.1|DY235137
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|71303928|gb|DR788084.1|DR788084
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|74240146|gb|DT648060.1|DT648060
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|18179920|gb|BM381130.1|BM381130
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|101384207|gb|EB814148.1|EB814148
EST:     CCACTTTTCCCTGGCGACTGGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|211319985|gb|FK976019.1|FK976019
EST:     GCTCCACATCTTCAA                         GTTGCTTGGCACCCCNAACGAACAGGTGTGGCCAGGCGTCGKCAAGCTGCC
genomic: GCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|31405807|gb|CD484539.1|CD484539
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|89757627|gb|DY687149.1|DY687149
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|101392378|gb|EB818118.1|EB818118
EST:     CCACTTTTCCCTGGCGACTGGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|76922225|gb|DV168906.1|DV168906
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|60356285|gb|DN223258.1|DN223258
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|93283535|gb|EB675799.1|EB675799
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|71329065|gb|DR801241.1|DR801241
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|86471024|gb|DY237394.1|DY237394
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|78089074|gb|DV517465.1|DV517465
EST:     CACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATNCTTCA-                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGC
genomic: CACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACAT-CTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGC
EST: gi|50338053|gb|CO533179.1|CO533179
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|21626004|gb|BQ620925.1|BQ620925
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|60337211|gb|DN204184.1|DN204184
EST:     GCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: GCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|60337212|gb|DN204185.1|DN204185
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|91878044|gb|EB408001.1|EB408001
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|71431252|gb|DR812302.1|DR812302
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|211319987|gb|FK976021.1|FK976021
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGC
EST: gi|71766503|gb|DR964440.1|DR964440
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|71430256|gb|DR811306.1|DR811306
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|74239489|gb|DT647403.1|DT647403
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|60354544|gb|DN221517.1|DN221517
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|211319986|gb|FK976020.1|FK976020
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|31910221|gb|CD651315.1|CD651315
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|88748411|gb|DY532552.1|DY532552
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
EST: gi|21088773|gb|BQ401086.1|BQ401086
EST:     CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA                         GTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC
genomic: CCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 219

CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCCCAACTGGCACGAGTACCCCCAGTGGAAGCCGACGAAGCTGTCTGCTCTT


Block sizes: 45 (upstream exon), 47 (downstream exon)
Score: 6

CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCCCAACTGGCACGAGTACCCCCAGTGGAAGCCGACGAAGCTGTCTGCTCTT


Block sizes: 42 (upstream exon), 44 (downstream exon)
Score: 20

CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCCCAACTGGCACGAGTACCCCCAGTGGAAGCCGACGAAGCTGTCTGCTCTT


Block sizes: 47 (upstream exon), 46 (downstream exon)
Score: 33

CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAAgtaacacagt ... gggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCCCAACTGGCACGAGTACCCCCAGTGGAAGCCGACGAAGCTGTCTGCTCTT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcggtgtgtgtctctgtactgacggcgatccatcttgcttcctgggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCCCAACTGGCACGAGTACCCCCAGTGGAAGCCGACGAAGCTGTCTGCTCTT
                  tactgac  putative branch site (score: 33)
                                       cttcctg  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaacacagtccattgcttgtttaccgaaactctcggtgtgtgtctctgtactgacggcgatccatcttgcttcctgggacggcagGTTGCTTGGCACCCCAAACGAACAGGTGTGGCCAGGCGTCGGCAAGCTGCCCAACTGGCACGAGTACCCCCAGTGGAAGCCGACGAAGCTGTCTGCTCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG