Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgtattgtttatattactttcagctgctgcattttatttctctgaactcgtattatgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAG

Basic information

species Zea mays
transcript GRMZM2G067985_T07
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G067985_T07 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 4
---------gtatgttgtattgtttatattactttcagctgctgcattttatttctctgaactcgtatt--atgatgaaac-gaaataacttctgagttctgttatgacgtgcccttgatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAG----------------------------------
            ||||    |||   |  |||  | |  || |  | |||| ||    ||||   | |   ||||| || | |   |||| ||| |  |||||| | | ||    ||| ||| | ||||||||||||| ||||| |||||||| || |||||||| |||||||| |||||||| |||||||                                    
gtaggaagctcctgttcatctgtagttgctacaat-aattgttaaactttactttctggaacatatgtctcatgattaacctgtggtaacatctaaaatctgttgt-atgtcgtgttggtttgc-agATGTGGATATCAAAGGACGAGTACGACGAATCTGGCCCAGCAATTGTCCACAGGAAATGCTTCTGATTTTCTCAAGTGCTCTGCTCTTGTCATCTGTAGT

upper sequence: GRMZM2G067985_T07 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 4
gtatgttgtattgtttatattactttcagctgctgcattttatttctc-tgaactcgtattatgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAG----------------------------------
                                  |   ||  ||| || |||| | |   | |  ||    |  ||      ||| | ||   |  |  ||   | | ||| | |||||||||| ||||| |  || || ||||||||||||||  | ||||| |||||||||||||||||                                   
----------------------------------gtgattattttatcatgaattagctctttcgtgtg-tgccattttcattgaatgctaa-aaaaaatgttgtggttttgc-agATGTGGATTTCTAAAGGTGAATATGATGAGTCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAACTTCTAAGTACAAAATATGCTTCAATGGTGAATT

upper sequence: GRMZM2G067985_T07 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
gtatgttgtattgtttatattactttcagctgctgcattttatttctctgaactcgtattatgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAG----------------------------------
                 |  |  |||    |  ||||  |||| |||   | | ||| |    || | |   ||  |                  || ||   ||| |||  |||||||||||||| ||||  || || ||||||||||| ||  | ||||| |||||||||||||||||                                   
----------------gtgattgttttgtttattgcaaattatctcttcca-cacgtgtaccaattagattgaacta-----------------aacatgtt-ttggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAATGGTGAGTTATGTT

upper sequence: GRMZM2G067985_T07 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 3
gtatgttgtattgtttatattactttcagctgctgcattttatttctc-tgaactcgtattatgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAG----------------------------------
                                  |   ||  ||| || | || | |   |   |||          | ||        || ||  |  ||   | | ||| | |||||||||| ||||| |  || || ||||||||||||||  | ||||| |||||||||||||||||                                   
----------------------------------gtgattcttttatcattaattagctcttccatgtgtt----ccattttcattgattgctaaaaaatgttgtggttttgc-agATGTGGATTTCTAAAGGTGAATATGATGAGTCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAACTTCTAAGTACAAAATATGCTTCAATGGTGAAAT

upper sequence: GRMZM2G067985_T07 (Zea mays), 3'ss of exon 4
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 3
gtatgttgtattgtttatattactttcagctgctgcattttatttctctgaactcgtattatgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttac--cagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAG---
            ||  | | |  ||| |  || |||   | || |   || | |  || |          |  |    || | |||       |  | | || || |   |   |||||||||||||| ||||  || |||||||| || || || || |||||||||||||||||||||||    
------------gtaaaaaattgttttatttg-tgcccatgatgtgggtggaatgatagtcaaggagtttgtga----ttgttagtctcagagtctcattccatttaaaaattgcagATGTGGATATCCAAGGGTGAATACGATGAATCCGGTCCTGCCATTGTTCACAGGAAGTGCTTCTAATTT

upper sequence: GRMZM2G067985_T07 (Zea mays), 3'ss of exon 4
lower sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 5
--------------------gtatgttgtattgtttatattactttcagctgctgcat-tttatttctctgaa--ctcgtattatgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAG----------------------------------
                     |  |||| |||   | | ||  |||  |        | ||| |||||   ||  ||||  || ||  ||  |   |    |||||   | |  |  |   | |   |  |    |||||||||||  | |||  ||||||||||||||| || ||  ||||||| ||||||||||| ||||||                                  
gtaatgtatttgactcgtgtctgagttgcatttcgtgtttttttttatgtcttcatgtctttgtttcttcaaatgctcgcgtt-tgtcgaggctgtaatctttctggaatttaatccg-tttacttgttgtggtgcagATGTGGATTGCGAAGTCGGAGTACGATGAGTCAGGTCCATCAATTGTGCACAGGAAGTGTTTCTAGAGCAGTGCGACACATCTTTTGCTTTTTTCAGCAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32934587|gb|CF039399.1|CF039399
EST:     GTGTCTGGATAGGAGGGTCTATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|60396171|gb|DN229040.1|DN229040
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32839111|gb|CD978792.1|CD978792
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTA
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTA
EST: gi|32943685|gb|CF048504.1|CF048504
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTAC
EST: gi|32832966|gb|CD972644.1|CD972644
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGT
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGT
EST: gi|33101313|gb|CF061273.1|CF061273
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTAC
EST: gi|32836668|gb|CD976346.1|CD976346
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCAAAGGAGGAGTA
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTA
EST: gi|33101525|gb|CF061485.1|CF061485
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTAC
EST: gi|211466781|gb|FL184421.1|FL184421
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGC
EST: gi|33093620|gb|CF053614.1|CF053614
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATGTCAAG-AGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCT-AAGGAGGAGTAC
EST: gi|32928959|gb|CF033771.1|CF033771
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGT
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGT
EST: gi|32945275|gb|CF050094.1|CF050094
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGCATATCTAAGGAGGAGT
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGT
EST: gi|32839344|gb|CD979025.1|CD979025
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGT
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGT
EST: gi|32835411|gb|CD975089.1|CD975089
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCAAAGGAGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTAC
EST: gi|33093799|gb|CF053793.1|CF053793
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGT
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGT
EST: gi|33101828|gb|CF061788.1|CF061788
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTAC
EST: gi|6056466|gb|AW090856.1|AW090856
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32835009|gb|CD974687.1|CD974687
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTAC
EST: gi|32837424|gb|CD977102.1|CD977102
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCAAAGGAGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTAC
EST: gi|32837212|gb|CD976890.1|CD976890
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTA
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTA
EST: gi|32836528|gb|CD976206.1|CD976206
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCAAAGGAGGAGT
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAG
           aaataactt  TA-rich tract