Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgtattgtttatattactttcagctgctgcattttatttctctgaactcgtattatgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAGGCTTCGCAAGTTCCTCATCGTTGCCTAGTCTCAA

Basic information

species Zea mays
transcript GRMZM2G067985_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G067985_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 4
---------gtatgttgtattgtttatattactttcagctgctgcattttatttctctgaactcgtatt--atgatgaaac-gaaataacttctgagttctgttatgacgtgcccttgatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAGGCTTCGCAAGTTCCTCATCGTTGCCTAGTCTCAA
            ||||    |||   |  |||  | |  || |  | |||| ||    ||||   | |   ||||| || | |   |||| ||| |  |||||| | | ||    ||| ||| | ||||||||||||| ||||| |||||||| || |||||||| |||||||| |||||||| |||||||    ||| ||||| |       ||| |   | |   
gtaggaagctcctgttcatctgtagttgctacaat-aattgttaaactttactttctggaacatatgtctcatgattaacctgtggtaacatctaaaatctgttgt-atgtcgtgttggtttgc-agATGTGGATATCAAAGGACGAGTACGACGAATCTGGCCCAGCAATTGTCCACAGGAAATGCTTCTGATTTTCTCAAGTGCTCTGCTCTTGTCATCTGTAGT

upper sequence: GRMZM2G067985_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 4
gtatgttgtattgtttatattactttcagctgctgcattttatttctc-tgaactcgtattatgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAGGCTTCG----CAAGTTCCTCATCGTTGCCTAGTCTCAA
                                  |   ||  ||| || |||| | |   | |  ||    |  ||      ||| | ||   |  |  ||   | | |||  ||||||||||| ||||| |  || || ||||||||||||||  | ||||| |||||||||||||||||   |       |||  |   | ||  ||   | |     
----------------------------------gtgattattttatcatgaattagctctttcgtgtg-tgccattttcattgaatgctaaaaaaa-atgttgt-ggttttgcagATGTGGATTTCTAAAGGTGAATATGATGAGTCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAACTTCTAAGTACAAAATATGCTTCAATGGTGAATT----

upper sequence: GRMZM2G067985_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
gtatgttgtattgtttatattactttcagctgctgcattttatttctctgaactcgtattatgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAGGCTTCGCA--AGTTCCTCATCGTTGCCTAGTCTCAA
                 |  |  |||    |  ||||  |||| |||   | | ||| |    || | |   ||  |                  || ||   ||| |||  |||||||||||||| ||||  || || ||||||||||| ||  | ||||| ||||||||||||||||| |      |  | | | | |  | ||  |  | |   
----------------gtgattgttttgtttattgcaaattatctcttcca-cacgtgtaccaattagattgaacta-----------------aacatgtt-ttggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAATGGTGAGTTATGTT--

upper sequence: GRMZM2G067985_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 3
gtatgttgtattgtttatattactttcagctgctgcattttatttctc-tgaactcgtattatgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAGGCTTCGCAAGTTCCTCATCGTTGCCTAGTCTCAA--
                                  |   ||  ||| || | || | |   |   |||          | ||        || ||  |  ||   | | |||  ||||||||||| ||||| |  || || ||||||||||||||  | ||||| |||||||||||||||||  ||||  |||| |   ||      | |   | ||  
----------------------------------gtgattcttttatcattaattagctcttccatgtgtt----ccattttcattgattgctaaaaaatgttgt-ggttttgcagATGTGGATTTCTAAAGGTGAATATGATGAGTCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAA-CTTC-TAAGTACAAAATATGCTTCAATGGTGAAAT

upper sequence: GRMZM2G067985_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 3
gtatgttgtattgtttatattactttcagctgctgcattttatttctctgaactcgtattatgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttac--cagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAGGCTTCGCAAGTTCCTCATCGTTGCCTAGTCTCAA
            ||  | | |  ||| |  || |||   | || |   || | |  || |          |  ||    | | |||       |  | | || || |   |   |||||||||||||| ||||  || |||||||| || || || || |||||||||||||||||||||||   |                               
------------gtaaaaaattgttttatttg-tgcccatgatgtgggtggaatgatagtcaaggagtttgtgat----tgttagtctcagagtctcattccatttaaaaattgcagATGTGGATATCCAAGGGTGAATACGATGAATCCGGTCCTGCCATTGTTCACAGGAAGTGCTTCTAATTT-------------------------------

upper sequence: GRMZM2G067985_T02 (Zea mays), 3'ss of exon 4
lower sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 5
--------------------gtatgttgtattgtttatattactttcagctgctgcat-tttatttctctgaa--ctcgtattatgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAG-GCTTCGCAAGTTCCTCATCGTTGCCTAGTCTCAA---
                     |  |||| |||   | | ||  |||  |        | ||| |||||   ||  ||||  || ||  ||  |   |    |||||   | |  |  |   | |   |  |    |||||||||||  | |||  ||||||||||||||| || ||  ||||||| ||||||||||| |||||| ||   || |    | |||| ||  ||  | |||    
gtaatgtatttgactcgtgtctgagttgcatttcgtgtttttttttatgtcttcatgtctttgtttcttcaaatgctcgcgtt-tgtcgaggctgtaatctttctggaatttaatccg-tttacttgttgtggtgcagATGTGGATTGCGAAGTCGGAGTACGATGAGTCAGGTCCATCAATTGTGCACAGGAAGTGTTTCTAGAGCAGTGCGA----CACATCTTTTGCTTTTTTCAGCAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211469304|gb|FL184432.1|FL184432
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32909718|gb|CF014530.1|CF014530
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTATTTAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|14191270|gb|BG833500.1|BG833500
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|113704038|gb|EE681542.1|EE681542
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|60400623|gb|DN233430.1|DN233430
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|4647445|gb|AI622520.1|AI622520
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|6601805|gb|AW256246.1|AW256246
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|116824174|gb|EC867776.1|EC867776
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|33097997|gb|CF057957.1|CF057957
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32934587|gb|CF039399.1|CF039399
EST:     GTGTCTGGATAGGAGGGTCTATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|24770093|gb|CA405222.1|CA405222
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32839111|gb|CD978792.1|CD978792
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTA
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTA
EST: gi|60343482|gb|DN210455.1|DN210455
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|149057032|gb|EE156588.2|EE156588
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATTTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|5108418|gb|AI740131.1|AI740131
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|5608105|gb|AI901772.1|AI901772
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32943685|gb|CF048504.1|CF048504
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTAC
EST: gi|32866364|gb|CF006046.1|CF006046
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|116829080|gb|EC864064.1|EC864064
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|5770162|gb|AI973336.1|AI973336
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32832966|gb|CD972644.1|CD972644
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGT
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGT
EST: gi|33101313|gb|CF061273.1|CF061273
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTAC
EST: gi|5058657|gb|AI737133.1|AI737133
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|14204041|gb|BG837718.1|BG837718
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32836668|gb|CD976346.1|CD976346
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCAAAGGAGGAGTA
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTA
EST: gi|33097013|gb|CF056973.1|CF056973
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|33101525|gb|CF061485.1|CF061485
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTAC
EST: gi|4680853|gb|AI629523.1|AI629523
EST:     CTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: CTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32937465|gb|CF042284.1|CF042284
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|4573340|gb|AI586899.1|AI586899
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|211466788|gb|FL184428.1|FL184428
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCGCTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGCTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|4647444|gb|AI622519.1|AI622519
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCCCTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTCCGATGAGTCTGGCCCGGCAATTGTTCCC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|211466781|gb|FL184421.1|FL184421
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGC
EST: gi|33093620|gb|CF053614.1|CF053614
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATGTCAAG-AGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCT-AAGGAGGAGTAC
EST: gi|32858588|gb|CD998269.1|CD998269
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|78115338|gb|DV533726.1|DV533726
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32928959|gb|CF033771.1|CF033771
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGT
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGT
EST: gi|32945275|gb|CF050094.1|CF050094
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGCATATCTAAGGAGGAGT
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGT
EST: gi|116825455|gb|EC869179.1|EC869179
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCAC-TTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32863951|gb|CF003633.1|CF003633
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32866365|gb|CF006047.1|CF006047
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|60396171|gb|DN229040.1|DN229040
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|211466783|gb|FL184423.1|FL184423
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|6448428|gb|AW181194.1|AW181194
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|78115337|gb|DV533725.1|DV533725
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|60356890|gb|DN223863.1|DN223863
EST:     GTGTTTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATTTAAGGAGGAGTACGATGAGTTTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|5108060|gb|AI739773.1|AI739773
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|37386734|gb|CF630555.1|CF630555
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32839344|gb|CD979025.1|CD979025
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGT
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGT
EST: gi|31363401|gb|CD447758.1|CD447758
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|16919590|gb|BM074264.1|BM074264
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32835411|gb|CD975089.1|CD975089
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCAAAGGAGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTAC
EST: gi|60355877|gb|DN222850.1|DN222850
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|67027414|gb|CO456163.1|CO456163
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|33093799|gb|CF053793.1|CF053793
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGT
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGT
EST: gi|32848173|gb|CD987854.1|CD987854
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32848296|gb|CD987977.1|CD987977
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32860131|gb|CD999812.1|CD999812
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|5739726|gb|AI947302.1|AI947302
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCCCTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|60397376|gb|DN230192.1|DN230192
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|211471836|gb|FL184452.1|FL184452
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|33101828|gb|CF061788.1|CF061788
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTAC
EST: gi|60395421|gb|DN228291.1|DN228291
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32858587|gb|CD998268.1|CD998268
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|6056466|gb|AW090856.1|AW090856
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32835009|gb|CD974687.1|CD974687
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTAC
EST: gi|32837424|gb|CD977102.1|CD977102
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCAAAGGAGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTAC
EST: gi|32837212|gb|CD976890.1|CD976890
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTA
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTA
EST: gi|116820761|gb|EC864004.1|EC864004
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32936443|gb|CF041262.1|CF041262
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|60401088|gb|DN233895.1|DN233895
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|29543507|gb|CB603889.1|CB603889
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32860132|gb|CD999813.1|CD999813
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32836528|gb|CD976206.1|CD976206
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCAAAGGAGGAGT
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGT
EST: gi|211466782|gb|FL184422.1|FL184422
EST:     GTGTCTGGATAGGAGGGTCCACCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1112

ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTATAGTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAGGCTTCGCAAGTTCCTCATCGTTGCCTAGTCTCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1198

ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTATAGTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAGGCTTCGCAAGTTCCTCATCGTTGCCTAGTCTCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1251

ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTATAGTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAGGCTTCGCAAGTTCCTCATCGTTGCCTAGTCTCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 721

ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTATAGTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAGGCTTCGCAAGTTCCTCATCGTTGCCTAGTCTCAA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAGGCTTCGCAAGTTCCTCATCGTTGCCTAGTCTCAA
           aaataactt  TA-rich tract