Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaagcatgccattgcacgcacaacctagttcatgtttcttgcccatactgatgttcggatgctgtttctggtgttacctctgcgtggaaatctgaatatgctctcatactatgttcagGCTAAG

Basic information

species Zea mays
transcript GRMZM2G067476_T01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18181378|gb|BM382588.1|BM382588
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18172871|gb|BM348259.1|BM348259
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18167113|gb|BM336952.1|BM336952
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|16926595|gb|BM079663.1|BM079663
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|15053687|gb|BI359232.1|BI359232
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|17932024|gb|BM268984.1|BM268984
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|78105566|gb|DV523984.1|DV523984
EST:     AGAGAAGAAGTTTGATTGG                         GTTAAG
genomic: AGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|31357834|gb|CD442191.1|CD442191
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|148973350|gb|EE024440.2|EE024440
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18163508|gb|BM333347.1|BM333347
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|60400336|gb|DN233143.1|DN233143
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|51592511|gb|CV071657.1|CV071657
EST:     CGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: CGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18168234|gb|BM338074.1|BM338074
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18176005|gb|BM351115.1|BM351115
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|101397131|gb|EB820489.1|EB820489
EST:     TCCCCCTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GTTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|5108408|gb|AI740121.1|AI740121
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|50331163|gb|CO526289.1|CO526289
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|22819811|gb|BU499901.1|BU499901
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|13381706|gb|BG458261.1|BG458261
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18161892|gb|BM331731.1|BM331731
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|17929925|gb|BM266885.1|BM266885
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18162749|gb|BM332588.1|BM332588
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18173671|gb|BM349059.1|BM349059
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|89249775|gb|DY621561.1|DY621561
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18176508|gb|BM351441.1|BM351441
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18172256|gb|BM347644.1|BM347644
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18173129|gb|BM348517.1|BM348517
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|78081514|gb|DV509926.1|DV509926
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|28985718|gb|CB350781.1|CB350781
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|78081882|gb|DV510294.1|DV510294
EST:     TCCCCCTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|16378806|gb|BI992621.1|BI992621
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|113643490|gb|DW799967.1|DW799967
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAGAGGCTTGTGA
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAGAGGCTTGTGA
EST: gi|6742602|gb|AW313417.1|AW313417
EST:     TCCCNCTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18168815|gb|BM338655.1|BM338655
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18168659|gb|BM338499.1|BM338499
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|7135836|gb|AW498291.1|AW498291
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|78025862|gb|DV494249.1|DV494249
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18167604|gb|BM337444.1|BM337444
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|28986044|gb|CB350941.1|CB350941
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18174386|gb|BM349774.1|BM349774
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18164000|gb|BM333839.1|BM333839
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|50334314|gb|CO529440.1|CO529440
EST:     TCCCCCTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18170719|gb|BM340559.1|BM340559
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|14244099|gb|BG841759.2|BG841759
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18174175|gb|BM349563.1|BM349563
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|15426866|gb|BI542688.1|BI542688
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18171772|gb|BM341612.1|BM341612
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|78026101|gb|DV494488.1|DV494488
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18173140|gb|BM348528.1|BM348528
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18172051|gb|BM347439.1|BM347439
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|17931731|gb|BM268691.1|BM268691
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18162934|gb|BM332773.1|BM332773
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|17930674|gb|BM267634.1|BM267634
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|15053686|gb|BI359231.1|BI359231
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|17930017|gb|BM266977.1|BM266977
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|110524573|gb|EE028757.1|EE028757
EST:     TCCCCCTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18165958|gb|BM335797.1|BM335797
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|37391749|gb|CF633118.1|CF633118
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18163404|gb|BM333243.1|BM333243
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|148963283|gb|EE014273.2|EE014273
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|211489309|gb|FL450049.1|FL450049
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|32859855|gb|CD999536.1|CD999536
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG
EST: gi|18171008|gb|BM340848.1|BM340848
EST:     TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 388

GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 480

GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 546

GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 362

GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagc ... ctatgttcagGCTAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttctggtgttacctctgcgtggaaatctgaatatgctctcatactatgttcagGCTAAG
                             tgaatat  TA-rich tract