1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taacctgaaatcattgtacttttctctcatttcttcagatatttccaaaactctatattagatgatttatgtttgcttacttagtctttcttaatctcagGCAATCCTAAGGGTAGCAGCTGCATAGCTGTAGAGATAAAG
species | Zea mays |
transcript | GRMZM2G067299_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAACACTGCTGATGCCGCTCTTCTGATAGCAGACCACTCTTTATTTTCTG GCAATCCTAAGGGTAGCAGCTGCATAGCTGTAGAGATAAAGEST: gi|149107346|gb|EE189225.2|EE189225
genomic: TAACACTGCTGATGCCGCTCTTCTGATAGCAGACCACTCTTTATTTTCTGgtacgtactt ... ttaatctcagGCAATCCTAAGGGTAGCAGCTGCATAGCTGTAGAGATAAAG
EST: TAACACTGCTGATGCCGCTCTTCTGATAGCAGACCACTCTTTATTTTCTG GCAATCCTAAGGGTAGCAGCTGCATAGCTGTAGAGATAAAGEST: gi|78112747|gb|DV531141.1|DV531141
genomic: TAACACTGCTGATGCCGCTCTTCTGATAGCAGACCACTCTTTATTTTCTGgtacgtactt ... ttaatctcagGCAATCCTAAGGGTAGCAGCTGCATAGCTGTAGAGATAAAG
EST: TAACACTGCTGATGCCGCTCTTCTGATAGCAGACCACTCTTTATTTTCTG GCAATCCTAAGGGTAGCAGCTGCATAGCTGTAGAGATAAAGEST: gi|149086246|gb|EE175786.2|EE175786
genomic: TAACACTGCTGATGCCGCTCTTCTGATAGCAGACCACTCTTTATTTTCTGgtacgtactt ... ttaatctcagGCAATCCTAAGGGTAGCAGCTGCATAGCTGTAGAGATAAAG
EST: TAACACTGCTGATGCCGCTCTTCTGATAGCAGACCACTCTTTATTTTCTG GCAATCCTAAGGGTAGCAGCTGCATAGCTGTAGAGATAAAGEST: gi|94477323|gb|EB706281.1|EB706281
genomic: TAACACTGCTGATGCCGCTCTTCTGATAGCAGACCACTCTTTATTTTCTGgtacgtactt ... ttaatctcagGCAATCCTAAGGGTAGCAGCTGCATAGCTGTAGAGATAAAG
EST: TAACACTGCTGATGCCGCTCTTCTGATAGCAGACCACTCTTTATTTTCTG GCAATCCTAAGGGTAGCAGCTGCATAGCTGTAGAGATAAAGEST: gi|71772065|gb|DR970002.1|DR970002
genomic: TAACACTGCTGATGCCGCTCTTCTGATAGCAGACCACTCTTTATTTTCTGgtacgtactt ... ttaatctcagGCAATCCTAAGGGTAGCAGCTGCATAGCTGTAGAGATAAAG
EST: TAACACTGCTGATGCCGCTCTTCTGATAGCAGACCACTCTTTATTTTCTG GCAATCCTAAAGGTAGCAGCTGCATAGCTGTAGAGATAAAG
genomic: TAACACTGCTGATGCCGCTCTTCTGATAGCAGACCACTCTTTATTTTCTGgtacgtactt ... ttaatctcagGCAATCCTAAGGGTAGCAGCTGCATAGCTGTAGAGATAAAG
caaaactctatattagatgatttatgtttgcttacttagtctttcttaatctcagGCAATCCTAAGGGTAGCAGCTGCATAGCTGTAGAGATAAAG
tctttcttaatctc CT-rich tract
tatattagatgattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacctgaaatcattgtacttttctctcatttcttcagatatttccaaaactctatattagatgatttatgtttgcttacttagtctttcttaatctcagGCAATCCTAAGGGTAGCAGCTGCATAGCTGTAGAGATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC