1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tctatcagtagagtagatactgttatcaggtgcctttaaaaagatgtgggacatttgtcttcaactgttggtctacttatacctcttttttgcattgcagTCATCAGTTCTACACTCGCAGCCGAAATCTACAGTGGGAACTCCTGCATACATTGCTCCTGAGGTTCTTCTGAAGAAGGAATACGATGGAAAG
species | Zea mays |
transcript | GRMZM2G066867_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACGGGAGCACCGCGCCTCGCCTCAAGATATGTGATTTTGGCTACTCAAAG TCATCAGTTCTACACTCGCAGCCGAAATCTACAGTGGGAACTCCTGCATACEST: gi|60398254|gb|DN231070.1|DN231070
genomic: ACGGGAGCACCGCGCCTCGCCTCAAGATATGTGATTTTGGCTACTCAAAGgtactgctag ... tgcattgcagTCATCAGTTCTACACTCGCAGCCGAAATCTACAGTGGGAACTCCTGCATAC
EST: GCCTCGCCTCAAGATATGTGATTTTGGCTACTCAAAG TCATCAGTTCTACACTCGCAGCCGAAATCTACAGTGGGAACTCCTGCATAC
genomic: GCCTCGCCTCAAGATATGTGATTTTGGCTACTCAAAGgtactgctag ... tgcattgcagTCATCAGTTCTACACTCGCAGCCGAAATCTACAGTGGGAACTCCTGCATAC
gtgggacatttgtcttcaactgttggtctacttatacctcttttttgcattgcagTCATCAGTTCTACACTCGCAGCCGAAATCTACAGTGGGAACTCCTGCATACATTGCTCCTGAGGTTCTTCTGAAGAAGGAATACGATGGAAAG
cttatacctctttttt CT-rich tract
tacttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctatcagtagagtagatactgttatcaggtgcctttaaaaagatgtgggacatttgtcttcaactgttggtctacttatacctcttttttgcattgcagTCATCAGTTCTACACTCGCAGCCGAAATCTACAGTGGGAACTCCTGCATACATTGCTCCTGAGGTTCTTCTGAAGAAGGAATACGATGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - -gatactg
- - - - - - - - - - - - - caggtgc
- - - - - - - - - - - - - - - - - - -aaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - acatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttggt