1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tattgagtctaaaacttttggactctagagtctcctgcagaatttttatcaagattagttcttacagtaatatttccccctcccttttgcatgtatctagCGGGCGCAAGGTTGAGGATCCTGACATGTTAGAAAGGATACGGCTAACCATCATCAACAACCTGCTCCAGTATCATCCT
species | Zea mays |
transcript | GRMZM2G066496_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCCACATCATGCGATT CGGGCGCAAGGTTGAGGATCCTGACATGTTAGAAAGGATACGGCTAACCATEST: gi|32830465|gb|CD970143.1|CD970143
genomic: TTCCACATCATGCGATTgtgggtgctt ... atgtatctagCGGGCGCAAGGTTGAGGATCCTGACATGTTAGAAAGGATACGGCTAACCAT
EST: GTGACAACTGACTCAGCTGTCACACAAACAAAGTTCCACATCATGCGATT TGGGCGCAAGGTTGAGGACCCTGACATGTTAGAAAGGATTCGGCTAACCATEST: gi|118406764|gb|EH038212.1|EH038212
genomic: GTGGCAACTGACTCAGCTGTCACACAAACAAAGTTCCACATCATGCGATTgtgggtgctt ... atgtatctagCGGGCGCAAGGTTGAGGATCCTGACATGTTAGAAAGGATACGGCTAACCAT
EST: CAGCTGTCACACAAACAAAGTTCCACATCATGCGATT CGGGCGCAAGGTTGAGGATCCTGACATGTTAGAAAGGATACGGCTAACCAT
genomic: CAGCTGTCACACAAACAAAGTTCCACATCATGCGATTgtgggtgctt ... atgtatctagCGGGCGCAAGGTTGAGGATCCTGACATGTTAGAAAGGATACGGCTAACCAT
ttatcaagattagttcttacagtaatatttccccctcccttttgcatgtatctagCGGGCGCAAGGTTGAGGATCCTGACATGTTAGAAAGGATACGGCTAACCATCATCAACAACCTGCTCCAGTATCATCCT
ttcttac putative branch site (score: 300)
tatttccccctccctt putative PPT
ttacagtaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgagtctaaaacttttggactctagagtctcctgcagaatttttatcaagattagttcttacagtaatatttccccctcccttttgcatgtatctagCGGGCGCAAGGTTGAGGATCCTGACATGTTAGAAAGGATACGGCTAACCATCATCAACAACCTGCTCCAGTATCATCCT
- - - - - - - - - - - - - - - -ctcctgc