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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaagccttttgcagttttgctttgtttacagatatttggctgttgtatctgagttgttcaattggttattccttaacagACCTGGGCTGTCCTGAAGCCAGGATTCTTGGCTTTGCTTGAAGACCCTTTTGATCCAAAGCTTTTAGACGTCATTATTTTTGATGCATTGCCACATATGG

Basic information

species Zea mays
transcript GRMZM2G066485_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G066485_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g29050.1 (Oryza sativa), 3'ss of exon 4
gtattaagccttttgcagttttgctttgtttacagatatt---tggctgttgtatctgagttgttcaattggtta-ttccttaacagACCTGGGCTGTCCTGAAGCCAGGATTCTTGGCTTTGCTTGAAGACCCTTTTGATCCAAAGCTTTTAGACGTCATTATTTTTGATGCATTGCCACATATGG
|||||| ||||| |||| | ||||| | || ||| | |||||| | || | || ||||| | || | || || |||| ||||||||||||||||||||| ||||| || |||| ||||||||||||||||||||||| ||| |||| ||||||||| ||||||||||||
gtattatattttttgtagttcagttttgtatttagctatcttataatcattgtatttaagatattgaattgaacaatttttcaatagGTTTGGGTTGTCCTGAAGCCAGGATTCTTAGCTTTACTCAAAGATCCTTTTGATCCAAAGCTTTTAGATGTCCTTATCTTTGATGCACTGCCACATATGG

upper sequence: GRMZM2G066485_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA09G04620.1 (Glycine max), 3'ss of exon 5
----------------------------------------gtat-taagccttttgcagttttgctttgtttacagatatttggctgttgtatctgagttgttcaattggttattccttaa----cagACCTGGGCTGTCCTGAAGCCAGGATTCTTGGCTTTGCTTGAAGACCCTTTTGATCCAAAGCTTTTAGACGTCATTATTTTTGATGCATTGCCACATATGG
||| | | || | | || | |||| | || |||| | | || | | | |||| | | | | ||| |||||||| ||||| || ||||||||||| ||||| | ||| ||||| ||| || ||| | ||||| ||||| ||||||||| | |||| |
gtatagaattctgctttcgaagttggttaatatgcttcacttatcttggtattgtttaattcttttttggtaacttttattatattttgttaaactatattataaatttcctgtctttatatgtgcagGTATGGGCTGTACTGAAACCTGGATTCTTGGCATTGCTGGCAGATCCTTTCGATACACAGCCTCTAGACATCATTGTTTTTGATGTACTGCCTGCCTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttacagatatttggctgttgtatctgagttgttcaattggttattccttaacagACCTGGGCTGTCCTGAAGCCAGGATTCTTGGCTTTGCTTGAAGACCCTTTTGATCCAAAGCTTTTAGACGTCATTATTTTTGATGCATTGCCACATATGG
                                         ttattcctt  CT-rich tract
 agatattt  TA-rich tract