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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agctagacatccatgatccataagtgcaaaatttttgttggagttggaagctcctgtggacttttggtgctattttcttatagaacttgttcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCTTCCAAATTTTGACATAGCTTCTGATGCTTCGGCTACCTTTAAG

Basic information

species Zea mays
transcript GRMZM2G066051_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G066051_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os07g39630.1 (Oryza sativa), 3'ss of exon 4
-agctagacat-ccatgatccataagtgcaaaatttttgttggagttggaagctcctgtggacttttggtgctattttcttatagaacttgttcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCTTCCAAATTTTGACATAGCTTCTGATGCTTCGGCTACCTTTAAG
 | |||   || |  |  | |||||     ||| |  ||| | | || |||  |||||| |   |  ||||||  ||| |  | | |  |||||| | ||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || || |||||||| || |||||||||
caactaaggattctgttttacataaaccataaaatactgtagaaattagaaattcctgtcggaat--ggtgcttatttatcttggtaaatgttcactcacagGTACGTTTTAGAGTCTGACCACATGAAGAAGTTCTTTGACTATATACAACTTCCAAATTTTGACATTGCATCAGATGCTTCTGCGACCTTTAAG

upper sequence: GRMZM2G066051_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA15G12220.2 (Glycine max), 3'ss of exon 2
agctagacatccatgatccataagtgcaaaatttttgttggagttggaagctcctgtggacttttgg-tgctattttcttatagaactt----gttcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCTTCCAAATTTTGACATAGCTTCTGATGCTTCGGCTACCTTTAAG
   |  ||| | |  ||    ||  | |||||     | ||  ||  ||  |  |      |  |   |  | | ||  | ||   |||    |||   |  ||| |||||  |  | ||    |  ||||||||||| ||||||||||| || ||||||||||||||||| ||| | |||||| | || |||||||||
---tgaaca-ctagaattagaaaagggaaaatggcc-taggtcttataatttttttccccatcataactattgtgttgctgtaattcttcatggttttgtatcagATATGTGCTGAACTCACCTCGTATGAAGAAGTTTTTTGACTATATCCAACTTCCAAATTTTGACATTGCTGCGGATGCTGCAGCAACCTTTAAG

upper sequence: GRMZM2G066051_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA14G00940.1 (Glycine max), 3'ss of exon 4
agctagacatcca-tgatccataagtgcaaaatttttgttggagttggaagctcctgtggacttttggtgctattttcttatagaacttgttcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCTTCCAAATTTTGACATAGCTTCTGATGCTTCGGCTACCTTTAAG
|   | | ||  |   |  |||   ||||    |    ||||| ||  |   || |||     |||  |    | |   ||    | ||  |  ||   ||| || |||| || || || |||||||||||||| ||||||||||| ||||| ||||||||||| ||||| || ||||||   || || ||||| 
aaaaaaaaatgtagccaagcatct-tgcatggctgactttggaattttactttcttgttcctcttttttaaattctgactagcttaatttatggtttttagGCATATTTTGGAATCAGAGCACATGAAGAAGTTTTTTGACTATATTCAGCTACCAAATTTTGAAATAGCATCAGATGCTGTTGCAACTTTTAAA

upper sequence: GRMZM2G066051_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA02G47710.1 (Glycine max), 3'ss of exon 4
---------------------------------------------------------------------------agctagacatccatgatccataag----tgcaaaatttttgttggagttggaagctcctgtggacttttggtgctattttcttatagaacttgttcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCTTCCAAATTTTGACATAGCTTCTGATGCTTCGGCTACCTTTAAG
                                                                              || | |   |||   || | |    |||     |    ||| | ||  |   || |||  | ||||  |    | |   ||    | ||  |  ||   ||| ||||||| || || || |||||||||||||| ||||||||||| ||||| ||||| ||||| ||||| || ||||||   || || ||||| 
gtacgcaatttaaatcatctcttaattaattattcatgtcaacatagatctcatacttaattgttaactttcggagattaaaaaaaaatgtagcaaaggatcttgcgtggctgactttgaaattttactttcttgttcattttttctaaattctgactagtttaatttatgttttttagGCATGTTTTGGAATCAGAGCACATGAAGAAGTTTTTTGACTATATTCAGCTACCAAACTTTGAAATAGCATCAGATGCTGTTGCAACTTTTAAA

upper sequence: GRMZM2G066051_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA09G01370.2 (Glycine max), 3'ss of exon 4
agctagacatccatgatccataagtgcaaaatttttgttggagttggaagctcctgtggacttttggtgctattttcttatagaacttgttcatt----gacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCTTCCAAATTTTGACATAGCTTCTGATGCTTCGGCTACCTTTAAG
  ||  |||     ||   | ||  |  ||| |    | ||  ||  ||  |  |    |   |   |  | | ||  | ||   |||  | |||      ||| |||||  |  | ||    |  ||||||||||| ||||||||||| || ||||||||||||||||| ||| | |||||| | || |||||||||
--ctgaacactg--gaattagaaaagggaaaatgacctaggtcttataatttttttcccatcataactaatgtgttgctgtaattcttcatgattttgtatcagATATGTCCTGAACTCACCTCGTATGAAGAAGTTTTTTGACTATATCCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCAGCAACCTTTAAG

upper sequence: GRMZM2G066051_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA17G01180.1 (Glycine max), 3'ss of exon 3
agctagacatccatgatccataagtgcaaaatttttgttggagttggaagctcctgtggacttttggtgctattttctta--tagaacttgttcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCTTCCAAATTTTGACATAGCTTCTGATGCTTCGGCTACCTTTAAG
 | |  | |   |    |       | |  || ||| ||     |   | ||  ||||   | |   |  |  |    ||  ||  | | | |   |  ||| |||||| | || ||    || ||||||||||| |||||||| || |||||||||||||||||||||||| | |||||  | || || ||||||
-gttgtagaataaaagacagcctaggtatgatctttctttctagtatga-cttttgtgagttgtgacttgtgatgctgtaattattattggctttatatcagATATGTTCTGGACTCACCTCATATGAAGAAGTTTTTTGACTACATTCAGCTTCCAAATTTTGACATAGCTGCAGATGCCGCAGCAACTTTTAAG

upper sequence: GRMZM2G066051_T01 (Zea mays), 3'ss of exon 4
lower sequence: AT5G47540.1 (Arabidopsis thaliana), 3'ss of exon 4
---agctagacatccatgatccataagtgcaaaatttttgttggagttggaagctcctgtggacttttggtgctatttt--cttatagaacttgttcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCTTCCAAATTTTGACATAGCTTCTGATGCTTCGGCTACCTTTAAG
   ||| |  | |      | | | | |  |  |  | ||  | | ||      ||  | | |     |    | | ||  || |   || || ||      ||| |||||||| |||||||| ||  ||||||| |||||||| || ||||||||||||||||| ||||| ||| | |||||| | ||||| ||||||
gtgagccaatcgtttcattttcttcattttacgacctatggagtaattatggattca-gagaataacggaaaatgtgtttactaacttaatttctttggattcagATATGTTTTGGAGTCTGACCATGTGAAGAAATTCTTTGATTACATACAGCTTCCAAATTTCGACATTGCTGCCGATGCTGCTGCTACTTTTAAG

upper sequence: GRMZM2G066051_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv10s0405g00020.t01 (Vitis vinifera), 3'ss of exon 4
agctagacatccatgatccataagtgcaaaatttttgttggagttggaagc-tcctgtggactt---ttggtgctattttcttat--agaacttgttcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCTTCCAAATTTTGACATAGCTTCTGATGCTTCGGCTACCTTTAAG
         ||||    |  |  |   | |  |||| ||    ||   |   |  | |||  ||   |  ||   ||||||| ||  |    || ||   ||||||||| ||  | || || |  |||||||||||||| ||||| ||||| || ||||||||||||||||| ||| | |||||| | || || ||||||
------ctgtccaaaggcagtttgacaatatcttttattattattattattattatatgggtttaactgagttgaattttctaatttatggtttttttcctgacagGTACGTCCTGGAATCAGCGCACATGAAGAAGTTTTTTGATTATATTCAACTTCCAAATTTTGACATTGCTGCAGATGCTGCTGCAACTTTTAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148999214|gb|EE036133.2|EE036133
EST:     ATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTTGCA-G                         GTATGTTTTAGAGTCTGAACACATNGA-GAAGTTCTTTGACTATATACAG
genomic: ATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATT-GCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACAT-GAAGAAGTTCTTTGACTATATACAG
EST: gi|78107219|gb|DV525637.1|DV525637
EST:     CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAG                         GTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
genomic: CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
EST: gi|18660671|gb|BM500986.1|BM500986
EST:     CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAG                         GTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
genomic: CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
EST: gi|148999213|gb|EE036132.2|EE036132
EST:     CATTATGGTGCTATGTTGAGGGAATGTATTCGCCCCCAAAGCATTGCAAG                         GTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGGCTATATACAGCT
genomic: CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
EST: gi|7844268|gb|AW787490.1|AW787490
EST:     CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAG                         GTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
genomic: CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
EST: gi|6194845|gb|AW146949.1|AW146949
EST:     CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAG                         GTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
genomic: CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
EST: gi|111192096|gb|EE290232.1|EE290232
EST:     CATTATGGTGCTATGTTG-GGGAATGT-TTCGCCACCAAAGCATTGCAAG                         GTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
genomic: CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
EST: gi|148955827|gb|EC901514.2|EC901514
EST:     CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAG                         GTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATAT
genomic: CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATAT
EST: gi|71328881|gb|DR801123.1|DR801123
EST:     CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAG                         GTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
genomic: CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
EST: gi|31354689|gb|CD439046.1|CD439046
EST:     CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAG                         GTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
genomic: CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
EST: gi|149041351|gb|EE046989.2|EE046989
EST:     ATTATGGTGTTATGTTGAGGGAAGGTATTCGCCAACCAAAGCATTGCAAG                         GTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
genomic: ATTATGGTGCTATGTTGAGGGAATGTATTCGCC-ACCAAAGCATTGCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
EST: gi|78107218|gb|DV525636.1|DV525636
EST:     ATTATGGTGCTATG-TGNAGGGAATGTATTCGCCACCAAAGCATTGCAAG                         GTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
genomic: ATTATGGTGCTATGTTG-AGGGAATGTATTCGCCACCAAAGCATTGCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
EST: gi|32856027|gb|CD995708.1|CD995708
EST:     CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAG                         GTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
genomic: CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
EST: gi|60354560|gb|DN221533.1|DN221533
EST:     CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAG                         GTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
genomic: CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
EST: gi|149082296|gb|EE171481.2|EE171481
EST:     TTATGGTGCTATGTTGAGGGGATGTATTCGGCC-CCAAAGCATTTGCA-G                         GTATGTTTTAGAG
genomic: TTATGGTGCTATGTTGAGGGAATGTATTCG-CCACCAAAGCATT-GCAAGgtgatactac ... tcattgacagGTATGTTTTAGAG
EST: gi|6994177|gb|AW453391.1|AW453391
EST:     CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAG                         GTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
genomic: CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
EST: gi|7844267|gb|AW787489.1|AW787489
EST:     CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAG                         GTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
genomic: CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
EST: gi|6022524|gb|AW067557.1|AW067557
EST:     CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAG                         GTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
genomic: CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
EST: gi|6445388|gb|AW179351.1|AW179351
EST:     CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAG                         GTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
genomic: CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
EST: gi|6056599|gb|AW091004.1|AW091004
EST:     CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAG                         GTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
genomic: CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
EST: gi|60350125|gb|DN217098.1|DN217098
EST:     CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAG                         GTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
genomic: CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
EST: gi|211020659|gb|FL429513.1|FL429513
EST:     CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAG                         GTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT
genomic: CATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 197

GTATGAGAACATGGACATCGCTTTACATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCTTCCAAATTTTGACATAGCTTCTGATGCTTCGGCTACCTTTAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 292

GTATGAGAACATGGACATCGCTTTACATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCTTCCAAATTTTGACATAGCTTCTGATGCTTCGGCTACCTTTAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 198

GTATGAGAACATGGACATCGCTTTACATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCTTCCAAATTTTGACATAGCTTCTGATGCTTCGGCTACCTTTAAG


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 234

GTATGAGAACATGGACATCGCTTTACATTATGGTGCTATGTTGAGGGAATGTATTCGCCACCAAAGCATTGCAAGgtgatactac ... tcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCTTCCAAATTTTGACATAGCTTCTGATGCTTCGGCTACCTTTAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaagctcctgtggacttttggtgctattttcttatagaacttgttcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCTTCCAAATTTTGACATAGCTTCTGATGCTTCGGCTACCTTTAAG
                                        cttgttc  CT-rich tract
                         tattttcttatagaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agctagacatccatgatccataagtgcaaaatttttgttggagttggaagctcctgtggacttttggtgctattttcttatagaacttgttcattgacagGTATGTTTTAGAGTCTGAACACATGAAGAAGTTCTTTGACTATATACAGCTTCCAAATTTTGACATAGCTTCTGATGCTTCGGCTACCTTTAAG

- - - - atccatg
- - - - - - - - - - - - - - - - -tttgttg
- - - - - - - - - - - - - - - - - - - - - - - - -gctcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttggt