1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgtatctatccttgccctgagttccctgccaactgtagcatgatctttaaaatctgatagaaattaattttacattctatgaagatgctgattgtttaacaaccacaataatttagtaatgtttagcttgtactcatctctggtgttgtctcaaattttgtctaacaatttatatatctctttttcttctgtccagAGGGCATTATTGGCGAAACACTCAGTAAATTTAGCATATGGAGTTTATATATTACTTTTGTTCTAGCTGTTGCGAGATTTATTAGGCTTCAGTGCTCAGA
species | Zea mays |
transcript | GRMZM2G065388_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCAAGGGCTGAATGGTCCCATGGCTATAGTTGTTTCTGAGGAGACACCTC AGGGCATTATTGGCGAAACACTCAGTAAATTTAGCATATGGAGTTTATATAEST: gi|211466929|gb|FK962957.1|FK962957
genomic: TCAAGGGCTGAATGGTCCCATGGCTATAGTTGTTTCTGAGGAGACACCTCgtatgtatct ... ttctgtccagAGGGCATTATTGGCGAAACACTCAGTAAATTTAGCATATGGAGTTTATATA
EST: TCAAGGGCTGAATGGTCCCATGGCTATAGTTGTTTCTGAGGAGACACCTC AGGGCATTATTGGCGAAACACTCAGTAAATTTAGCATATGGAGTTTATATA
genomic: TCAAGGGCTGAATGGTCCCATGGCTATAGTTGTTTCTGAGGAGACACCTCgtatgtatct ... ttctgtccagAGGGCATTATTGGCGAAACACTCAGTAAATTTAGCATATGGAGTTTATATA
ggtgttgtctcaaattttgtctaacaatttatatatctctttttcttctgtccagAGGGCATTATTGGCGAAACACTCAGTAAATTTAGCATATGGAGTTTATATATTACTTTTGTTCTAGCTGTTGCGAGATTTATTAGGCTTCAGTGCTCAGA
gtctaac putative branch site (score: 57)
tttatatatctctttt putative PPT
tcaaattttgtctaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtatctatccttgccctgagttccctgccaactgtagcatgatctttaaaatctgatagaaattaattttacattctatgaagatgctgattgtttaacaaccacaataatttagtaatgtttagcttgtactcatctctggtgttgtctcaaattttgtctaacaatttatatatctctttttcttctgtccagAGGGCATTATTGGCGAAACACTCAGTAAATTTAGCATATGGAGTTTATATATTACTTTTGTTCTAGCTGTTGCGAGATTTATTAGGCTTCAGTGCTCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT