1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttccttattctccttgagttattggcaaatggtatacctgctaagattgataaaacttatgtcaagtattattaatttcttgcttgttgtttgtactcagTACTCAGTGGAGATAACACCAAATAAAGCCAGTATACTTTCCAAG
species | Zea mays |
transcript | GRMZM2G065130_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATATTTCTCCATTGATTCATATGCAAAGCTTGTGGTTATGGTTCTCAAG TACTCAGTGGAGATAACACCAAATAAAGCCAGTATACTTTCCAAGEST: gi|74243504|gb|DT651418.1|DT651418
genomic: CATATTTCTCCATTGATTCATATGCAAAGCTTGTGGTTATGGTTCTCAAGgtacctaaag ... ttgtactcagTACTCAGTGGAGATAACACCAAATAAAGCCAGTATACTTTCCAAG
EST: CATATTTCTCCATTGATTCATATGCAAAGCTTGTGGTTATGGTTCTCAAG TACTCAGTGGAGATAACACCAAATAAAGCCAGTATACTTTCCAAGEST: gi|211122374|gb|FL379873.1|FL379873
genomic: CATATTTCTCCATTGATTCATATGCAAAGCTTGTGGTTATGGTTCTCAAGgtacctaaag ... ttgtactcagTACTCAGTGGAGATAACACCAAATAAAGCCAGTATACTTTCCAAG
EST: CATATTTCTCCATTGATTCATATGCAAAGCTTGTGGTTATGGTTCTCAAG TACTCAGTGGAGATAACACCAAATAAAGCCAGTATACTTTCCAAG
genomic: CATATTTCTCCATTGATTCATATGCAAAGCTTGTGGTTATGGTTCTCAAGgtacctaaag ... ttgtactcagTACTCAGTGGAGATAACACCAAATAAAGCCAGTATACTTTCCAAG
attgataaaacttatgtcaagtattattaatttcttgcttgttgtttgtactcagTACTCAGTGGAGATAACACCAAATAAAGCCAGTATACTTTCCAAG
tattaat putative branch site (score: 195)
taaaacttatgtcaag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccttattctccttgagttattggcaaatggtatacctgctaagattgataaaacttatgtcaagtattattaatttcttgcttgttgtttgtactcagTACTCAGTGGAGATAACACCAAATAAAGCCAGTATACTTTCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - -ctccttg
- - - - - - - - - - - - gcaaatg
- - - - - - - - - - - - - - - - - - cctgcta
- - - - - - - - - - - - - - - - - - - - - - - - gataaaac