1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...catcagaattacttttctcataaactgcgatgaatccatcgttagtttttttgtaacatatcatgttacttactgcaaatatcacttggcctgcaggcagGCAAGTGAAAACAAGAGAATCGATCTTTTTGATGGGCCAAGTGCTGAAGATGGCTTTGGTGAAGAAAATGTCCTGTTAGCATCAA
species | Zea mays |
transcript | GRMZM2G065105_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACA GCAGGCAAGTGAAAACAAGAGAATCGATCTTTTTGATGGGCCAAGTGCTGAEST: gi|211162284|gb|FL231527.1|FL231527
genomic: ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACAgtgagttttg ... ctgcaggcagGCA---A-GTGAAAACAAGAGAATCGATCTTTTTGATGGGCCAAGTGCTGA
EST: ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACA GCAGGCAAGTGAAAACAAGAGAATCGATCTTTTTGATGGGCCAAGTGCTGAEST: gi|60340573|gb|DN207546.1|DN207546
genomic: ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACAgtgagttttg ... ctgcaggcagGCA---A-GTGAAAACAAGAGAATCGATCTTTTTGATGGGCCAAGTGCTGA
EST: ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACA GCAAGTGAAAACAAGAGAATCGATCTTTTTGATGGGCCAAGTGCTGAAGATEST: gi|89246761|gb|DY618548.1|DY618548
genomic: ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACAgtgagttttg ... ctgcaggcagGCAAGTGAAAACAAGAGAATCGATCTTTTTGATGGGCCAAGTGCTGAAGAT
EST: ATCAAAGAATTAAACTCTTACGTTGCTCTAAAGAAACAGCAEST: gi|89246761|gb|DY618548.1|DY618548
genomic: ATCAAAGAATTAAACTCCTACGTTGCTCTAAAG-AA-A-CAgtgagttttg ... ctgcaggc
EST: ATCAAAGAATTAAACTCTTACGTTGCTCTAAAGAAACAGCAEST: gi|211357112|gb|FL231558.1|FL231558
genomic: ATCAAAGAATTAAACTCCTACGTTGCTCTAAAG-AA-A-CAgtgagttttg ... ctgcaggc
EST: ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACA GCAGGCAAGTGAAAACAAGAGAATCGATCTTTTTGATGGGCCAAGTGCTGAEST: gi|211357114|gb|FL231560.1|FL231560
genomic: ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACAgtgagttttg ... ctgcaggcagGCA---A-GTGAAAACAAGAGAATCGATCTTTTTGATGGGCCAAGTGCTGA
EST: ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACA GCAGGCAAGTGAAAACAAGAGAATCGATCTTTTTGATGGGCCAAGTGCTGAEST: gi|71761831|gb|DR959768.1|DR959768
genomic: ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACAgtgagttttg ... ctgcaggcagGCA---A-GTGAAAACAAGAGAATCGATCTTTTTGATGGGCCAAGTGCTGA
EST: ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACAGCAEST: gi|71761831|gb|DR959768.1|DR959768
genomic: ATCAAAGAATTAAACTCCTACGTTGCTCTAAAG-AA-A-CAgtgagttttg ... ctgcaggc
EST: ATCAAAGAATTAAACTCCTACGTTGCTCTAAAGAAACAGCA
genomic: ATCAAAGAATTAAACTCCTACGTTGCTCTAAAG-AA-A-CAgtgagttttg ... ctgcaggc
tttttttgtaacatatcatgttacttactgcaaatatcacttggcctgcaggcagGCAAGTGAAAACAAGAGAATCGATCTTTTTGATGGGCCAAGTGCTGAAGATGGCTTTGGTGAAGAAAATGTCCTGTTAGCATCAA
tacttac putative branch site (score: 10)
taacatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catcagaattacttttctcataaactgcgatgaatccatcgttagtttttttgtaacatatcatgttacttactgcaaatatcacttggcctgcaggcagGCAAGTGAAAACAAGAGAATCGATCTTTTTGATGGGCCAAGTGCTGAAGATGGCTTTGGTGAAGAAAATGTCCTGTTAGCATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - -tgcgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tactgca