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gtaaattaaagcacattcaaaggagtttttacctattaatgatatttatctgacgaaagaaaaaaaacataatccgctgaatgttttcttcgcttcagATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTA
species | Zea mays |
transcript | GRMZM2G065012_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCAAATGCAG ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTNNNNNNNNNEST: gi|76283614|gb|DV023182.1|DV023182
genomic: TCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCAAATGCAGgtaaattaaa ... ttcgcttcagATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTA
EST: TCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCAAATGCAG ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTAEST: gi|71333237|gb|DR803673.1|DR803673
genomic: TCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCAAATGCAGgtaaattaaa ... ttcgcttcagATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTA
EST: TCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCAAATGCAG ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTNNNNNNNNN
genomic: TCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCAAATGCAGgtaaattaaa ... ttcgcttcagATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTA
atttatctgacgaaagaaaaaaaacataatccgctgaatgttttcttcgcttcagATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTA
atctgac putative branch site (score: 308)
tgttttcttcgcttc putative PPT
aaagaaaaaaaacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattaaagcacattcaaaggagtttttacctattaatgatatttatctgacgaaagaaaaaaaacataatccgctgaatgttttcttcgcttcagATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC