Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctctatttcatcatggattatcttcttctggacaccatcccaactcttgttccactgcattgttgccctttcatgacttgtcttgttgaatgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG

Basic information

species Zea mays
transcript GRMZM2G064988_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064988_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g02960.3 (Oryza sativa), 3'ss of exon 5
tctctatttcatcatggattatcttcttctggacaccatccc--aactcttgttccactgcattgttgccctttcatgacttgtcttgttgaatgtt---tgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG
    ||| |||   |  |||  ||| | |    ||   |||   |  |      ||| |   |  |     | | || |||| | |  ||| || ||   ||||||||||||| |||||| |||| || |||||||| || || ||||| ||||||||||||||||| |||||||||
---atatgtca--gtaaattcccttgtacaacccatgttcctttatattccaaaccagtaactgttcaatttgtgataacttatataattggatattgattgaagGTGGGTTCAACCTTCTCTTATGGCCATGGAAGGGGAGATGATGCTAAAACTCTTGCAGAGCTAGGATTCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22819373|gb|BU499463.1|BU499463
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|74243421|gb|DT651335.1|DT651335
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|74243422|gb|DT651336.1|DT651336
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|9028651|gb|BE238691.1|BE238691
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|211327564|gb|FL371063.1|FL371063
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|78544086|gb|DV621584.1|DV621584
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|26557837|gb|CA830072.1|CA830072
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|5608284|gb|AI901951.1|AI901951
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|211291291|gb|FL447804.1|FL447804
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|76284202|gb|DV023770.1|DV023770
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|6012215|gb|AW061757.1|AW061757
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|60348995|gb|DN215968.1|DN215968
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|4624196|gb|AI615029.1|AI615029
EST:     ATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: ATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|8665349|gb|BE186165.1|BE186165
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|28910088|gb|CB331256.1|CB331256
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGCTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAAGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|113701690|gb|EE679194.1|EE679194
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|8665640|gb|BE186456.1|BE186456
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|37394446|gb|CF634497.1|CF634497
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|33096101|gb|CF056095.1|CF056095
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|211199113|gb|FL383377.1|FL383377
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|8665340|gb|BE186156.1|BE186156
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|4885900|gb|AI677020.1|AI677020
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|60399890|gb|DN232700.1|DN232700
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|9028622|gb|BE238662.1|BE238662
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|22552497|gb|BU102336.1|BU102336
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|31558542|gb|CD527754.1|CD527754
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|15499296|gb|BI595809.1|BI595809
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|21843145|gb|BQ703726.1|BQ703726
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|20802464|gb|BQ293514.1|BQ293514
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|60291853|gb|DN190092.1|DN190092
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|86470083|gb|DY236453.1|DY236453
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|37396964|gb|CF635776.1|CF635776
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|60347753|gb|DN214726.1|DN214726
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|50322625|gb|CO517751.1|CO517751
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|31664335|gb|CD573060.1|CD573060
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|60343137|gb|DN210110.1|DN210110
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|26456052|gb|CA827635.1|CA827635
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|211136465|gb|FL473223.1|FL473223
EST:     GTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|101396763|gb|EB820307.1|EB820307
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|18178204|gb|BM379414.1|BM379414
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|101396473|gb|EB820163.1|EB820163
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|87157278|gb|DY402067.1|DY402067
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|30087735|gb|CB885941.1|CB885941
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTAAACAATCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|211327957|gb|FL398348.1|FL398348
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATTGCCAAAAC
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGAT-GCCAAAAC
EST: gi|211426706|gb|FL073219.1|FL073219
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|101396475|gb|EB820164.1|EB820164
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
EST: gi|15427138|gb|BI542960.1|BI542960
EST:     CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG                         GTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT
genomic: CTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 536

GTGAAAGAGGTTGCTCTTCCAGCAAGAAAAAGGAATGCAAGGCTTTCTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 305

GTGAAAGAGGTTGCTCTTCCAGCAAGAAAAAGGAATGCAAGGCTTTCTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 292

GTGAAAGAGGTTGCTCTTCCAGCAAGAAAAAGGAATGCAAGGCTTTCTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 217

GTGAAAGAGGTTGCTCTTCCAGCAAGAAAAAGGAATGCAAGGCTTTCTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGgtaaggttgt ... atgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgttccactgcattgttgccctttcatgacttgtcttgttgaatgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG
                                            aatgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tctctatttcatcatggattatcttcttctggacaccatcccaactcttgttccactgcattgttgccctttcatgacttgtcttgttgaatgtttgaagGTGGGTTCGACCTTCGCTTACGGTCATGGAAGAGGCGACGATGCCAAAACTCTTGCAGAGCTCGGATTCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT